Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.1e-247 858.2 500 100.0
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.9e-133 479.2 378 72.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.5e-97 359.4 399 53.4
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.0e-89 334.0 399 52.4
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.7e-86 322.8 400 51.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 7.5e-84 315.5 404 49.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-79 301.6 400 47.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 5.6e-79 299.3 370 48.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 5.6e-79 299.3 373 48.5
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 9.5e-79 298.5 357 48.7
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.2e-78 298.1 352 49.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.1e-78 297.4 370 48.6
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.1e-78 297.4 401 47.1
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.8e-78 297.0 401 47.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.8e-78 297.0 401 46.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.6e-78 296.6 401 47.1
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.1e-77 295.0 396 46.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.4e-77 294.7 352 49.4
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.8e-77 294.3 352 49.1
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.3e-77 293.9 352 49.4
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.1e-77 293.5 401 46.9
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 3.1e-77 293.5 352 49.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 5.2e-77 292.7 357 48.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 6.8e-77 292.4 401 46.6
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 8.9e-77 292.0 379 46.7
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.9e-77 292.0 358 47.8
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.2e-76 291.6 357 48.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.5e-76 291.2 343 49.9
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.5e-76 291.2 358 48.3
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.0e-76 290.8 396 46.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-76 290.8 401 46.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 2.0e-76 290.8 352 49.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.0e-76 290.8 372 47.6
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.4e-76 290.0 395 45.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.4e-76 290.0 401 46.4
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.4e-76 290.0 352 49.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.4e-76 290.0 357 47.9
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 4.4e-76 289.7 392 46.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 9.8e-76 288.5 352 48.6
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 9.8e-76 288.5 366 48.1
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.7e-75 287.7 396 46.2
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.7e-75 286.6 346 47.7
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.9e-75 286.2 368 47.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 4.9e-75 286.2 396 46.0
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.3e-75 285.4 357 48.7
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 8.3e-75 285.4 396 45.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 8.3e-75 285.4 399 44.4
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.4e-74 283.9 395 45.8
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 3.2e-74 283.5 403 44.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.4e-74 282.7 351 47.6
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.4e-74 282.7 347 47.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 7.1e-74 282.3 397 45.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.1e-74 282.3 353 47.3
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 9.2e-74 282.0 400 45.2
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.7e-73 280.4 407 44.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 4.6e-73 279.6 375 45.3
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.6e-73 279.6 375 45.3
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.6e-72 275.4 396 45.5
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.9e-71 274.2 350 46.6
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.5e-71 273.9 400 44.0
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 5.6e-71 272.7 364 44.5
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 5.6e-71 272.7 395 43.3
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 6.2e-70 269.2 403 42.7
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 6.2e-70 269.2 401 42.9
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.1e-70 268.9 350 44.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.1e-69 268.5 356 45.8
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.1e-69 268.5 395 43.3
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.1e-69 268.5 357 43.7
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.4e-69 268.1 322 49.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.4e-69 268.1 395 42.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.1e-69 266.9 396 43.4
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.0e-69 266.5 365 43.6
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 4.0e-69 266.5 343 47.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 8.9e-69 265.4 352 45.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.0e-68 264.2 374 46.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.7e-67 261.2 367 43.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.7e-67 261.2 351 45.6
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.2e-67 260.8 400 40.2
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.2e-67 260.8 343 45.8
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.1e-66 258.5 394 41.9
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 4.1e-66 256.5 387 42.6
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 7.1e-66 255.8 326 46.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 7.1e-66 255.8 343 45.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.5e-65 253.4 352 44.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.6e-65 253.1 396 43.4
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.6e-65 253.1 401 41.1
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 4.6e-65 253.1 328 46.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.3e-64 251.5 361 43.2
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 6.6e-64 249.2 373 44.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.5e-63 248.1 433 39.5
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.5e-63 248.1 381 41.7
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 7.3e-63 245.7 434 38.9
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.7e-62 243.0 400 40.2
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.4e-61 241.5 344 43.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.1e-61 240.4 350 43.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 8.9e-61 238.8 345 42.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 8.9e-61 238.8 401 40.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.0e-60 237.7 351 43.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.0e-60 237.7 368 43.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.4e-60 236.5 344 43.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 7.6e-60 235.7 400 40.2
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.7e-59 234.6 401 37.9
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 4.9e-59 233.0 434 38.2
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 6.4e-59 232.6 458 36.7
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.7e-57 227.3 252 52.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 3.5e-57 226.9 356 41.9
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 6.0e-57 226.1 361 41.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 8.7e-56 222.2 332 41.3
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.5e-55 221.5 428 38.3
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.5e-55 220.7 341 42.2
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 7.3e-55 219.2 421 37.3
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.1e-54 217.6 344 41.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.8e-54 216.5 307 44.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.5e-52 211.5 396 36.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 2.6e-52 210.7 260 48.1
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.9e-50 204.5 335 40.6
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.5e-49 200.3 297 43.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.0e-48 198.7 298 41.3
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.6e-46 191.4 191 56.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 6.9e-45 186.0 194 54.1
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.1e-38 164.5 266 43.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.1e-37 160.6 191 49.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 4.0e-37 160.2 337 34.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.1e-33 147.9 276 37.0
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.3e-32 144.4 269 36.1
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.0e-27 129.0 175 45.7
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.0e-24 119.0 288 36.5
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.5e-23 114.4 184 39.7
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.4e-21 108.6 183 41.5
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.6e-20 104.4 121 43.8
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.4e-20 104.0 200 36.0
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.1e-18 99.0 123 48.0
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.5e-18 97.8 63 69.8
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 6.1e-17 93.2 63 68.3
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 6.1e-17 93.2 187 33.2
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.8e-13 81.6 98 46.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.1e-13 80.5 56 67.9
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.2e-12 79.0 71 54.9
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 3.4e-12 77.4 71 53.5
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.7e-11 75.1 240 24.6
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 8.5e-11 72.8 79 51.9
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.9e-10 71.6 115 40.9
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 9.4e-10 69.3 52 63.5
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 3.3e-07 60.8 203 26.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.4e-07 59.7 110 38.2


User provided reference genes

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