Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 4.5e-113 411.8 223 100.0
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 5.0e-80 302.0 216 81.9
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 7.1e-58 228.4 190 70.5
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.0e-56 223.0 177 68.4
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.7e-56 221.5 177 68.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.1e-55 221.1 186 68.8
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.9e-55 220.3 186 67.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.5e-55 219.9 186 61.3
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 3.3e-55 219.5 177 70.1
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.3e-55 219.5 187 68.4
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.3e-55 219.2 186 68.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 4.3e-55 219.2 186 67.2
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 7.3e-55 218.4 186 67.7
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 9.6e-55 218.0 186 68.3
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 9.6e-55 218.0 186 67.2
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.6e-54 217.2 186 67.2
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 1.6e-54 217.2 186 67.7
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.6e-54 217.2 177 69.5
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.8e-54 216.5 190 67.9
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.8e-54 216.5 186 67.7
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 2.8e-54 216.5 223 59.6
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.6e-54 216.1 186 68.3
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 6.2e-54 215.3 185 68.1
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 8.1e-54 214.9 186 66.7
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 8.1e-54 214.9 187 67.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-53 214.5 182 68.1
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.1e-53 214.5 186 66.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.1e-53 214.5 186 66.7
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.4e-53 214.2 186 67.2
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.1e-53 213.0 186 67.2
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.1e-53 213.0 186 66.7
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 4.0e-53 212.6 179 68.2
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.0e-53 212.6 186 65.6
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 5.3e-53 212.2 186 67.2
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.5e-52 210.7 186 68.3
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-52 210.7 186 64.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-52 210.3 186 65.1
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.6e-52 209.9 186 67.7
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 4.4e-52 209.1 186 65.6
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 7.6e-52 208.4 186 68.3
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 7.6e-52 208.4 177 67.2
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 9.9e-52 208.0 186 66.7
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 9.9e-52 208.0 186 65.1
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 1.7e-51 207.2 177 68.4
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.7e-51 207.2 167 71.9
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.2e-51 206.8 177 65.5
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-51 206.8 185 68.1
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.9e-51 206.5 180 66.7
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.9e-51 206.5 170 70.0
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 4.9e-51 205.7 186 66.1
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 8.4e-51 204.9 169 69.2
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.9e-50 203.8 186 62.9
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 2.4e-50 203.4 186 63.4
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 4.2e-50 202.6 185 64.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 4.2e-50 202.6 185 64.9
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.2e-50 202.6 209 54.1
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.6e-49 200.7 198 60.1
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.6e-49 200.7 165 71.5
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.6e-49 200.7 186 64.0
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.6e-49 200.7 205 59.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.7e-49 199.9 186 64.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 2.7e-49 199.9 186 65.1
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 3.5e-49 199.5 186 64.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.3e-48 197.6 186 63.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.3e-48 196.8 179 64.8
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.0e-48 196.4 186 62.4
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 3.9e-48 196.1 176 64.8
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 3.9e-48 196.1 186 60.2
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.1e-48 195.7 186 62.9
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 5.1e-48 195.7 199 59.8
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 8.7e-48 194.9 188 63.3
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.1e-47 194.5 177 63.8
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.5e-47 194.1 170 68.8
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 3.3e-47 193.0 185 62.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 7.3e-47 191.8 224 56.7
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 9.6e-47 191.4 161 72.0
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 1.3e-46 191.0 168 66.1
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.8e-46 189.1 162 66.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 8.1e-46 188.3 177 61.6
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.1e-45 188.0 186 62.9
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 4.0e-45 186.0 192 59.4
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 5.3e-45 185.7 178 55.6
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.0e-44 183.7 192 61.5
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.6e-44 183.3 151 73.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 2.2e-43 180.3 153 66.7
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.9e-43 179.9 159 65.4
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 6.4e-43 178.7 150 69.3
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 3.2e-42 176.4 122 71.3
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 5.4e-42 175.6 179 56.4
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 2.1e-41 173.7 186 53.2
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.7e-41 173.3 122 71.3
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.5e-41 172.9 150 68.0
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 7.9e-41 171.8 166 58.4
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 1.3e-40 171.0 185 52.4
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.3e-40 171.0 122 68.0
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.8e-40 170.6 126 66.7
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 5.1e-40 169.1 169 60.4
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.1e-39 167.9 122 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 5.6e-39 165.6 216 50.0
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 5.6e-39 165.6 163 61.3
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.4e-39 165.2 181 60.8
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.6e-38 164.1 150 65.3
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-38 162.5 157 52.9
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-37 159.8 173 60.1
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.0e-37 159.5 189 55.6
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.2e-36 157.9 153 62.7
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-36 157.5 159 64.8
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 2.6e-36 156.8 157 61.1
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 7.6e-36 155.2 166 52.4
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-35 154.8 174 54.0
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.9e-35 153.3 122 63.1
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.9e-35 153.3 156 62.2
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.5e-35 152.1 207 47.3
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 8.4e-35 151.8 215 41.4
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.5e-34 150.2 122 63.1
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.2e-33 147.9 195 45.1
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-33 147.5 181 55.2
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-33 147.1 119 65.5
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 3.0e-32 143.3 131 62.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.1e-31 141.4 123 58.5
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 2.5e-31 140.2 123 56.1
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 9.6e-31 138.3 170 49.4
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-30 137.9 136 65.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-30 136.7 107 65.4
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-29 134.8 90 73.3
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.4e-29 134.4 86 76.7
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-28 131.3 81 79.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-27 127.9 171 42.1
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-27 127.9 132 62.1
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-27 127.5 99 68.7
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 6.5e-27 125.6 112 61.6
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-26 124.4 154 46.1
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 2.5e-26 123.6 99 63.6
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.6e-25 120.9 148 45.9
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.6e-25 120.9 184 41.8
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 2.3e-24 117.1 73 76.7
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.0e-24 116.7 123 50.4
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.3e-23 113.2 134 59.7
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 4.3e-23 112.8 81 65.4
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-22 111.3 148 42.6
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.6e-22 110.9 174 40.8
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.7e-22 109.8 122 47.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-21 107.5 153 54.2
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-21 107.5 104 54.8
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-20 104.4 123 52.0
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.9e-20 102.4 139 44.6
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.9e-20 102.4 71 64.8
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-18 97.8 103 50.5
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 3.6e-17 93.2 172 45.9
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 3.0e-16 90.1 74 56.8
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.8e-16 88.6 125 44.8
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 2.0e-15 87.4 55 74.5
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.7e-14 84.3 55 70.9
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 3.7e-14 83.2 83 54.2
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.4e-13 80.5 182 39.0
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-11 75.1 129 39.5
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.7e-11 74.3 65 56.9
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-11 74.3 102 44.1
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 2.7e-09 67.0 68 47.1
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-09 67.0 68 47.1
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 1.4e-08 64.7 39 79.5
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 2.3e-08 63.9 100 41.0
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 3.9e-08 63.2 58 50.0
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 8.8e-08 62.0 141 31.9
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 1.7e-06 57.8 84 39.3
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.7e-06 56.6 66 53.0


User provided reference genes

Program Settings