Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0301 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 3.5e-95 351.7 185 100.0
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 1.4e-67 260.0 176 80.7
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 1.7e-20 103.6 105 56.2
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 1.1e-16 90.9 116 52.6
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 4.2e-16 89.0 108 51.9
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 5.5e-16 88.6 178 41.0
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 1.2e-15 87.4 111 51.4
Duzib150G1532 Durio zibethinus HOM05D001047 ORTHO05D000768 1.6e-15 87.0 115 51.3
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 6.1e-15 85.1 184 40.8
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 1.4e-14 84.0 171 37.4
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 3.0e-14 82.8 107 51.4
Gohir.A05G037500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 5.2e-14 82.0 114 49.1
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 5.2e-14 82.0 110 50.0
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 6.8e-14 81.6 106 53.8
Gorai.009G039500 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.2e-13 80.9 111 49.5
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 2.6e-13 79.7 167 40.1
Gohir.D05G039000 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.6e-13 79.7 111 49.5
Gohir.A07G018400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.3e-12 77.4 106 52.8
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 1.7e-12 77.0 101 50.5
BraA02t05602Z Brassica rapa HOM05D001047 ORTHO05D000768 2.2e-12 76.6 166 41.0
Os04g0653000 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 2.8e-12 76.3 110 48.2
Gohir.D07G018200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 3.7e-12 75.9 154 41.6
Gorai.001G018800 Gossypium raimondii HOM05D001047 ORTHO05D000768 3.7e-12 75.9 154 41.6
BcaC03g13812 Brassica carinata HOM05D001047 ORTHO05D000768 6.3e-12 75.1 165 43.0
TWI63G0579 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 1.4e-11 73.9 106 50.0
BolC2t07081H Brassica oleracea HOM05D001047 ORTHO05D000768 2.4e-11 73.2 165 43.0
BcaB05g22803 Brassica carinata HOM05D001047 ORTHO05D000768 4.1e-11 72.4 156 38.5
BNapus_Darmor_BZH_scaffold_38p01280 Brassica napus HOM05D001047 ORTHO05D000768 4.1e-11 72.4 168 41.1
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 5.4e-11 72.0 106 43.4
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 9.1e-11 71.2 154 39.0
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 1.2e-10 70.9 109 42.2
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 1.2e-10 70.9 166 35.5
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 1.6e-10 70.5 91 49.5
Carub.0006s1919 Capsella rubella HOM05D001047 ORTHO05D000768 2.7e-10 69.7 121 43.0
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 4.5e-10 68.9 98 48.0
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 4.5e-10 68.9 98 48.0
C02p10500 Brassica napus HOM05D001047 ORTHO05D000768 4.5e-10 68.9 169 39.6
FAN23G0009 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.5e-10 68.9 137 40.9
FAN23G0978 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.5e-10 68.9 137 40.9
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 5.9e-10 68.6 154 40.3
Aa31LG4G13350 Aethionema arabicum HOM05D001047 ORTHO05D000768 1.0e-09 67.8 96 45.8
CARHR191950 Cardamine hirsuta HOM05D001047 ORTHO05D000768 1.3e-09 67.4 100 41.0
HPP92_010992 Vanilla planifolia HOM05D001047 ORTHO05D000768 1.3e-09 67.4 90 51.1
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 1.7e-09 67.0 156 37.2
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 1.7e-09 67.0 156 37.2
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 1.7e-09 67.0 162 37.7
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 1.7e-09 67.0 102 41.2
FAN19G2610 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.7e-09 67.0 102 41.2
FAN26G1307 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.7e-09 67.0 102 41.2
FAN26G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 2.3e-09 66.6 102 41.2
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 2.3e-09 66.6 163 38.7
AT5G20900 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 2.9e-09 66.2 139 39.6
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 2.9e-09 66.2 154 38.3
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 2.9e-09 66.2 137 38.7
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 2.9e-09 66.2 96 42.7
MD15G1225800 Malus domestica HOM05D001047 ORTHO05D000768 2.9e-09 66.2 106 42.5
AL6G32450 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 3.8e-09 65.9 94 43.6
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 3.8e-09 65.9 96 44.8
RcHm_v2.0_Chr2g0096551 Rosa chinensis HOM05D001047 ORTHO05D000768 6.5e-09 65.1 108 41.7
Thecc.02G019400 Theobroma cacao HOM05D001047 ORTHO05D000768 1.1e-08 64.3 91 47.3
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 1.5e-08 63.9 96 43.8
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 1.9e-08 63.5 96 41.7
Ca_02314_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 2.5e-08 63.2 95 43.2
Actinidia39007 Actinidia chinensis HOM05D001047 ORTHO05D000768 3.2e-08 62.8 92 48.9
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 4.2e-08 62.4 99 42.4
CSS0011019 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 5.5e-08 62.0 92 47.8
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 7.2e-08 61.6 62 62.9
Sp6g23620 Schrenkiella parvula HOM05D001047 ORTHO05D000768 7.2e-08 61.6 155 34.8
Dinv07479 Davidia involucrata HOM05D001047 ORTHO05D000768 1.6e-07 60.5 92 46.7
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 1.6e-07 60.5 168 29.8
Manes.07G023500 Manihot esculenta HOM05D001047 ORTHO05D000768 1.6e-07 60.5 148 40.5
Medtr2g044910 Medicago truncatula HOM05D001047 ORTHO05D000768 1.6e-07 60.5 93 40.9
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 2.1e-07 60.1 93 46.2
Lj6g0013412 Lotus japonicus HOM05D001047 ORTHO05D000768 2.1e-07 60.1 103 38.8
SGA_v2.0_scaffold31G12677 Striga asiatica HOM05D001047 ORTHO05D000768 3.6e-07 59.3 91 47.3
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 4.7e-07 58.9 96 38.5
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 6.1e-07 58.5 101 40.6
COL.COLO4_17732 Corchorus olitorius HOM05D001047 ORTHO05D000768 8.0e-07 58.2 102 44.1
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 8.0e-07 58.2 99 42.4
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 8.0e-07 58.2 99 42.4
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 8.0e-07 58.2 99 42.4
TPR.G18015 Trifolium pratense HOM05D001047 ORTHO05D000768 1.8e-06 57.0 95 40.0
THA.LOC104799600 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 2.3e-06 56.6 153 35.3
MBI13_g05964_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 3.0e-06 56.2 51 58.8
CANSAT56G0578 Cannabis sativa HOM05D001047 ORTHO05D000768 4.0e-06 55.8 95 40.0
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 6.8e-06 55.1 116 43.1
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 8.8e-06 54.7 89 41.6


User provided reference genes

Program Settings