Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.8e-310 1067.4 557 100.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.4e-266 920.2 521 92.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 7.6e-178 627.9 530 62.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.5e-175 619.0 549 61.0
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.7e-173 611.7 558 59.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.1e-171 607.4 567 59.1
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.1e-171 605.9 567 58.9
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 5.3e-171 605.1 540 60.2
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 9.0e-171 604.4 551 61.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.5e-170 603.6 565 57.9
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.9e-170 601.7 548 61.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.0e-169 600.9 577 57.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.0e-169 600.9 536 60.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.7e-169 600.1 539 62.7
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.8e-169 599.0 559 61.0
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 6.5e-169 598.2 569 60.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.4e-169 597.8 568 58.1
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 5.5e-168 595.1 560 61.1
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 7.2e-168 594.7 558 58.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.2e-167 594.0 541 60.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.1e-167 593.2 562 57.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.1e-167 593.2 542 61.1
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 6.1e-167 591.7 560 58.8
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 7.9e-167 591.3 545 62.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.0e-166 590.9 541 61.9
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 3.0e-166 589.3 562 60.0
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.3e-165 585.9 556 60.4
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.7e-165 585.1 547 61.1
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 7.4e-165 584.7 563 58.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 7.4e-165 584.7 557 58.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 9.7e-165 584.3 561 56.5
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.8e-164 582.8 559 60.1
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 4.8e-164 582.0 546 59.3
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 8.2e-164 581.3 561 56.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.4e-163 580.5 555 59.8
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.8e-163 580.1 531 60.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 5.3e-163 578.6 558 55.9
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 6.9e-163 578.2 557 57.6
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.5e-162 577.0 559 55.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.7e-161 573.5 563 56.7
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.8e-161 572.4 558 57.2
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.5e-161 571.2 553 59.0
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.4e-160 570.5 559 58.7
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.9e-160 570.1 540 56.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 7.2e-160 568.2 485 62.9
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.6e-159 567.0 607 54.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.1e-159 566.6 563 54.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.7e-159 566.2 563 56.3
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.6e-159 565.8 570 54.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 6.1e-159 565.1 543 56.2
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 7.9e-159 564.7 554 57.6
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 7.9e-159 564.7 550 57.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-158 563.9 558 57.3
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.3e-158 563.1 552 56.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.3e-158 563.1 554 54.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 2.3e-158 563.1 564 57.4
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.3e-158 563.1 551 57.0
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 3.0e-158 562.8 558 57.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.0e-158 562.8 554 55.2
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 6.7e-158 561.6 557 54.9
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 8.8e-158 561.2 536 57.8
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 8.8e-158 561.2 558 57.2
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-157 560.8 561 56.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.5e-157 560.5 555 54.6
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.0e-157 560.1 556 54.1
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.3e-157 558.9 552 55.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.7e-157 558.5 582 57.0
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.7e-157 558.5 589 52.3
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 9.7e-157 557.8 540 57.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 9.7e-157 557.8 570 56.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 9.7e-157 557.8 549 54.6
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 9.7e-157 557.8 556 56.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.3e-156 557.4 532 59.2
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.3e-156 557.4 558 55.9
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 2.2e-156 556.6 553 54.1
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.8e-156 556.2 556 57.2
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.7e-156 555.8 448 65.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.8e-156 555.4 552 54.3
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.1e-155 554.3 546 55.7
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.1e-155 554.3 580 53.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.1e-155 554.3 557 54.0
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.4e-155 553.9 549 54.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.8e-155 553.5 546 55.9
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 2.4e-155 553.1 546 54.9
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 2.4e-155 553.1 572 53.3
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 6.9e-155 551.6 605 51.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 9.1e-155 551.2 557 55.1
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.2e-154 550.8 547 57.4
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.2e-154 550.8 549 54.5
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.2e-154 550.8 572 52.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-154 550.8 557 56.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.2e-154 550.8 557 54.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-154 550.4 571 55.7
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.0e-154 550.1 504 62.1
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.0e-154 550.1 536 58.0
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.4e-154 549.3 547 54.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.5e-154 548.9 556 57.0
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 5.9e-154 548.5 568 55.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.7e-154 548.1 573 54.8
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.0e-153 547.7 549 54.3
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.0e-153 547.7 557 54.8
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-153 547.4 549 54.3
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-153 547.0 547 54.3
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.7e-153 547.0 561 54.0
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-153 546.6 568 55.5
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.2e-153 546.6 577 54.9
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.9e-153 546.2 507 62.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 6.5e-153 545.0 548 54.4
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 6.5e-153 545.0 576 55.9
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.5e-153 544.7 591 52.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.9e-152 543.5 533 55.5
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.2e-152 542.7 556 54.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.2e-152 542.7 547 53.9
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.5e-152 542.0 555 54.6
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 7.2e-152 541.6 608 52.1
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.2e-151 540.8 565 53.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.6e-151 540.4 580 55.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.1e-151 538.5 542 55.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.8e-150 537.0 606 52.5
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 2.3e-150 536.6 617 49.8
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 3.9e-150 535.8 515 55.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 6.7e-150 535.0 554 52.9
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.1e-149 534.3 617 48.9
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 2.0e-149 533.5 541 57.1
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.4e-149 531.6 551 54.4
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-148 530.4 543 55.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.2e-148 530.0 528 57.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.3e-148 528.5 552 52.9
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-146 524.2 550 55.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.7e-145 520.4 464 58.2
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 6.5e-145 518.5 447 62.2
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 7.2e-144 515.0 537 53.4
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.1e-143 513.5 460 61.1
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 5.0e-137 492.3 550 49.8
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.7e-135 486.5 578 49.0
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.8e-134 483.8 564 51.1
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-126 457.6 521 49.9
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.4e-126 457.6 415 58.8
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.4e-123 447.6 538 47.2
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.0e-118 431.4 425 55.8
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.3e-118 430.3 369 64.5
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 5.2e-118 429.1 530 48.3
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 6.4e-108 395.6 379 59.9
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.2e-93 348.2 316 58.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 5.4e-91 339.3 625 35.0
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.4e-84 315.8 318 56.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.5e-80 303.9 290 58.3
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 9.9e-77 292.0 367 47.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 9.3e-59 232.3 163 73.0
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-46 191.8 256 47.7
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 9.1e-46 189.1 221 47.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-43 181.8 264 45.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.2e-37 162.2 384 32.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.5e-37 161.8 141 61.7
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.4e-35 155.2 450 27.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.1e-30 139.0 504 25.0
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.0e-28 130.2 167 50.3
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.0e-17 94.4 196 32.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.2e-15 88.2 101 44.6
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-14 85.1 78 62.8
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 5.4e-14 83.6 86 46.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 7.0e-14 83.2 82 56.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 9.1e-14 82.8 125 42.4
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.5e-13 80.9 68 48.5
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.5e-13 80.9 64 62.5
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 3.2e-11 74.3 100 40.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.6e-10 70.9 103 38.8
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-09 69.3 55 60.0
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.1e-06 57.4 35 80.0


User provided reference genes

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