Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 0.0e+00 1192.2 594 100.0
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 8.3e-239 830.5 604 69.2
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 6.5e-236 820.8 599 69.4
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 6.5e-236 820.8 599 68.8
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 9.8e-232 807.0 599 68.3
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 3.1e-230 802.0 599 68.9
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 3.1e-230 802.0 598 67.9
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 7.7e-229 797.3 600 67.3
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.8e-228 795.0 599 68.3
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 4.7e-226 788.1 599 67.9
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 4.0e-225 785.0 599 66.3
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 5.2e-225 784.6 600 66.7
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.5e-224 783.1 600 65.7
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.0e-224 782.7 599 66.4
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.6e-224 782.3 599 67.1
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.3e-223 780.0 599 66.3
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 1.7e-223 779.6 599 65.1
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 6.4e-223 777.7 599 66.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 8.3e-223 777.3 602 66.3
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 8.3e-223 777.3 601 65.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 2.4e-222 775.8 599 66.1
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 2.4e-222 775.8 599 65.9
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 3.2e-222 775.4 596 66.1
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 1.6e-221 773.1 599 66.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 2.0e-221 772.7 602 66.3
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 3.5e-221 771.9 599 66.3
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 4.6e-221 771.5 633 63.2
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 3.0e-220 768.8 600 65.3
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.5e-219 766.5 599 65.8
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.9e-219 766.1 599 64.6
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.9e-219 766.1 601 64.9
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 2.5e-219 765.8 599 65.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 4.3e-219 765.0 599 65.6
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 1.2e-218 763.5 584 65.8
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.2e-218 763.5 600 65.0
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.8e-218 762.3 606 63.7
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 4.4e-216 755.0 596 63.4
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 2.9e-215 752.3 600 63.7
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 3.7e-215 751.9 649 61.8
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 3.7e-215 751.9 596 63.1
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.7e-215 751.9 596 63.4
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 4.9e-215 751.5 611 62.8
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.1e-214 750.4 595 64.2
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 4.1e-214 748.4 598 63.7
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 4.1e-214 748.4 672 59.7
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 4.6e-213 745.0 596 64.8
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 1.5e-211 740.0 623 63.6
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 6.2e-210 734.6 600 63.8
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 3.1e-209 732.3 639 60.3
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 6.8e-209 731.1 598 62.2
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.0e-208 729.6 638 60.3
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.4e-206 722.6 601 62.6
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.4e-206 722.6 601 62.6
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.7e-205 719.2 557 66.2
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 7.8e-205 717.6 601 61.7
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 5.6e-203 711.4 595 62.0
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 9.5e-203 710.7 599 60.6
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 8.9e-201 704.1 578 62.1
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.2e-200 703.7 599 62.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 3.8e-199 698.7 601 59.1
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.9e-199 698.4 598 59.9
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 3.2e-198 695.7 559 65.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 4.6e-197 691.8 598 60.5
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.1e-195 687.2 601 59.7
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.5e-195 686.8 601 60.6
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 5.6e-195 684.9 604 59.1
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.1e-194 682.9 601 60.4
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.1e-194 682.9 600 58.8
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 5.2e-193 678.3 537 66.3
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 5.2e-193 678.3 597 59.3
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 2.6e-192 676.0 604 57.6
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 4.4e-192 675.2 604 58.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 7.6e-192 674.5 603 57.5
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 9.9e-192 674.1 606 58.7
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 2.9e-191 672.5 574 61.8
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 2.9e-191 672.5 604 58.3
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 6.4e-191 671.4 601 58.2
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.9e-190 669.8 579 59.8
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 2.4e-190 669.5 533 63.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 4.2e-190 668.7 604 58.1
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 5.4e-190 668.3 599 61.1
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.2e-189 667.2 605 58.2
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 7.8e-189 664.5 598 59.2
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 2.3e-188 662.9 549 61.4
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.9e-187 659.8 598 57.9
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 8.1e-186 654.4 688 52.5
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 3.4e-184 649.0 591 59.2
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 3.2e-182 642.5 611 58.8
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.2e-181 640.6 508 64.2
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 2.7e-181 639.4 627 56.3
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.6e-179 631.7 536 61.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 9.0e-177 624.4 562 58.0
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.2e-175 619.8 521 61.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 8.1e-170 601.3 487 63.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.4e-169 599.7 658 50.9
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.4e-142 510.8 531 52.5
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 6.7e-132 475.3 620 44.8
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.7e-131 472.2 397 61.7
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 7.2e-126 455.3 447 53.5
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 2.7e-125 453.4 380 59.5
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 4.2e-118 429.5 599 40.2
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.8e-92 344.4 242 70.2
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 8.9e-92 342.0 533 42.8
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 2.4e-73 280.8 247 57.5
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 7.1e-73 279.3 291 53.3
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 7.8e-72 275.8 205 70.2
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-70 271.9 616 32.3
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.9e-55 220.3 175 66.3
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.4e-35 154.1 142 57.0
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.2e-32 145.6 81 81.5
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 5.3e-28 130.2 121 51.2
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 2.0e-27 128.3 164 47.0
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 5.9e-27 126.7 118 59.3
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 5.3e-20 103.6 65 64.6
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 1.4e-15 89.0 413 24.2
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.1e-12 79.3 52 76.9
Rhsim08G0041400 Rhododendron simsii HOM05D000173 ORTHO05D006747 7.7e-11 73.2 421 21.6
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 9.4e-09 66.2 32 93.8
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.6e-08 65.5 405 24.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 2.7e-08 64.7 351 24.5
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 8.0e-08 63.2 354 24.6
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.8e-07 62.0 395 24.6
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 2.3e-07 61.6 401 23.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 2.3e-07 61.6 416 21.6
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 2.3e-07 61.6 413 23.7
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 3.0e-07 61.2 41 56.1
Lsat_1_v5_gn_2_94360 Lactuca sativa HOM05D000173 ORTHO05D006747 4.0e-07 60.8 419 20.0
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 4.0e-07 60.8 420 22.4
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 4.0e-07 60.8 350 24.9
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 4.0e-07 60.8 352 24.4
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 6.8e-07 60.1 423 23.2
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 8.8e-07 59.7 354 22.6
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.2e-06 59.3 421 23.3
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.5e-06 58.9 350 23.1
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.5e-06 58.9 352 23.6
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-06 58.9 41 65.9
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.0e-06 58.5 419 23.4
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 2.0e-06 58.5 422 20.1
CAN.G473.125 Capsicum annuum HOM05D000173 ORTHO05D006747 2.6e-06 58.2 249 22.5
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 2.6e-06 58.2 350 24.0
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 2.6e-06 58.2 348 23.3
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 2.6e-06 58.2 76 47.4
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 3.4e-06 57.8 349 21.2
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 3.4e-06 57.8 369 23.3
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.4e-06 57.8 354 23.4
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 4.4e-06 57.4 61 52.5
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 4.4e-06 57.4 428 20.8
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 5.7e-06 57.0 347 23.1
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 7.5e-06 56.6 349 21.2
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.8e-06 56.2 55 54.5


User provided reference genes

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