Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 0.0e+00 2556.2 1310 100.0
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.6e-301 1039.3 1387 46.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.7e-295 1018.5 1393 45.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 4.2e-267 925.6 1394 43.7
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 6.4e-252 875.2 1389 41.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 5.1e-249 865.5 1410 41.1
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 6.7e-241 838.6 1385 39.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 5.0e-236 822.4 1412 39.5
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 6.7e-233 812.0 1298 41.8
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 4.3e-232 809.3 1366 39.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.3e-231 807.7 1397 39.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 2.8e-231 806.6 1250 42.6
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.4e-230 803.5 1370 39.1
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.0e-228 798.1 1375 39.3
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 6.1e-226 788.9 1284 40.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.0e-225 788.1 1375 40.2
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 2.2e-223 780.4 1375 38.6
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 5.3e-222 775.8 1393 38.9
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 7.0e-222 775.4 1358 39.5
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.2e-221 774.6 1397 39.0
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 7.7e-221 771.9 1375 40.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.2e-220 770.4 1370 38.0
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 8.5e-220 768.5 1394 37.9
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.5e-219 766.9 1416 38.9
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 4.4e-216 756.1 1348 38.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.8e-215 753.4 1367 39.1
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.3e-215 752.3 1360 38.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.3e-214 749.2 1447 38.4
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.6e-213 746.9 1398 37.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 5.9e-213 745.7 1291 39.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 8.5e-212 741.9 1392 37.5
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 8.5e-212 741.9 1396 37.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 8.5e-212 741.9 1359 36.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.9e-211 740.7 1356 37.5
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 7.2e-211 738.8 1385 38.3
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 6.1e-210 735.7 1366 37.7
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 4.0e-209 733.0 1365 38.0
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.2e-208 731.5 1339 37.0
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 9.7e-208 728.4 1387 36.8
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.8e-207 726.9 1411 38.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.6e-200 703.7 1372 36.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 6.3e-199 699.1 1346 37.4
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 5.4e-198 696.0 1370 37.4
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.7e-196 691.0 1318 38.0
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.7e-196 691.0 1338 37.3
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.0e-196 689.5 1365 36.5
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 8.6e-196 688.7 1356 38.2
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 2.8e-194 683.7 1393 36.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.8e-191 673.7 1359 38.4
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.5e-189 666.8 1356 36.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.8e-189 665.6 1388 35.6
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 7.3e-187 659.1 1332 36.3
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.6e-186 657.9 1437 34.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 7.5e-184 649.0 1309 36.4
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.4e-183 646.0 1424 34.3
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 6.4e-183 646.0 1309 35.7
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 5.6e-179 632.9 1301 34.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.3e-177 627.5 1442 34.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.0e-177 626.7 1316 35.8
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.2e-177 626.3 1250 36.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.6e-173 614.8 949 42.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 8.9e-169 599.0 1409 33.2
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.0e-164 583.9 1367 34.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.4e-161 574.3 1314 33.7
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 6.2e-154 549.7 1313 32.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.4e-150 538.5 1316 33.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.1e-147 528.9 1266 33.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 5.3e-145 520.0 1283 34.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 6.0e-141 506.5 1307 32.4
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.3e-140 505.4 1351 31.7
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 3.0e-140 504.2 966 35.6
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 6.7e-140 503.1 759 40.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.5e-139 501.9 1304 33.4
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.9e-139 501.5 1347 31.6
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 4.3e-139 500.4 1325 33.1
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.6e-138 498.4 1358 31.5
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 5.8e-136 490.0 1370 31.1
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.2e-135 488.0 1270 31.2
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 3.2e-134 484.2 811 38.1
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.3e-132 478.0 1349 31.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 9.6e-131 472.6 1363 30.6
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.8e-129 468.4 1357 29.7
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 6.5e-127 459.9 1360 29.9
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.9e-126 458.4 1351 29.8
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.7e-116 423.3 697 38.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 3.1e-113 414.5 675 39.4
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-107 396.0 581 42.7
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.0e-107 395.2 1273 28.8
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 5.5e-102 377.1 1344 27.7
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.0e-100 371.3 1525 25.8
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 9.7e-99 366.3 1247 28.4
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-90 339.3 728 36.0
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 6.3e-90 337.0 1659 25.0
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.0e-88 332.0 1352 27.1
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.0e-79 303.1 817 30.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 9.8e-75 286.6 1051 28.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 4.6e-72 277.7 1295 25.5
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 6.2e-69 267.3 346 44.2
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 6.2e-69 267.3 247 57.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.7e-66 259.2 783 28.4
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.9e-66 257.7 341 45.5
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 7.0e-65 253.8 530 38.3
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.4e-60 239.6 269 49.4
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 3.1e-60 238.4 159 69.2
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 7.6e-51 207.2 1103 24.5
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.9e-38 166.0 102 76.5
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.0e-36 158.3 430 31.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.0e-18 100.5 175 34.9
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.5e-16 92.0 128 44.5
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 7.9e-16 90.9 389 24.4
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 7.4e-14 84.3 195 30.8
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.3e-13 83.6 55 67.3
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.0e-11 76.3 83 51.8
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.0e-11 76.3 112 41.1
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 3.4e-11 75.5 118 37.3
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 5.9e-11 74.7 63 47.6
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 7.6e-11 74.3 75 45.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 1.7e-10 73.2 73 46.6
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.9e-10 72.4 77 42.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 5.0e-10 71.6 74 40.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.0e-10 71.6 77 44.2
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.2e-09 68.6 83 39.8
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 9.3e-09 67.4 146 29.5
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 3.5e-08 65.5 90 44.4
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 4.6e-08 65.1 83 38.6
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.6e-08 65.1 44 63.6
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 1.3e-07 63.5 357 20.2
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 5.1e-07 61.6 217 28.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.3e-06 58.5 62 43.5
CBR_g19751 Chara braunii HOM05D002300 ORTHO05D002340 9.7e-06 57.4 210 20.5


User provided reference genes

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