Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-111 406.4 205 100.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.7e-74 283.1 197 70.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.0e-71 272.3 195 67.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.1e-71 271.6 195 68.2
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.5e-70 269.2 195 66.7
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.3e-70 268.5 136 95.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 5.6e-70 268.1 193 67.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.0e-67 259.6 195 65.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.5e-67 258.5 198 63.6
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-66 256.9 202 61.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.5e-66 254.6 192 63.5
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.1e-65 253.8 197 62.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.5e-65 251.5 193 65.8
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.6e-64 248.4 192 63.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 4.6e-64 248.4 198 62.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.0e-63 247.3 192 62.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.3e-63 246.1 191 62.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.7e-63 244.6 187 63.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.7e-63 244.6 192 62.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.1e-62 243.8 205 60.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-62 243.8 194 64.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.5e-62 243.4 199 57.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.5e-62 243.4 192 61.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.3e-62 241.9 187 63.6
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 7.4e-62 241.1 203 58.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.1e-61 239.6 193 60.1
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.8e-61 239.2 187 63.1
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.7e-61 238.8 205 60.0
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.7e-61 238.8 194 63.4
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.8e-60 236.5 189 62.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-60 235.7 194 61.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.3e-60 235.0 194 59.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.9e-60 234.6 194 58.8
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 9.0e-60 234.2 189 59.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 9.0e-60 234.2 193 59.6
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.2e-59 233.8 193 60.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-59 233.4 194 59.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.5e-59 233.4 188 62.2
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.0e-59 233.0 191 61.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.6e-59 232.6 192 59.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.4e-59 232.3 203 57.6
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.5e-59 231.9 195 59.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 7.6e-59 231.1 193 58.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.0e-58 230.7 193 60.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.0e-58 230.7 193 58.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.8e-58 228.8 198 56.6
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.8e-58 228.8 193 58.5
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.0e-58 228.4 192 59.4
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.5e-58 228.0 191 60.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 185 58.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.4e-57 226.9 198 56.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.9e-57 226.5 187 61.5
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.9e-57 226.5 196 57.7
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.9e-57 226.5 203 57.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.5e-57 226.1 193 57.5
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.5e-57 226.1 194 56.2
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-57 225.7 197 55.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.2e-57 225.7 193 57.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.2e-57 225.3 203 55.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.5e-57 224.9 196 57.1
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 9.3e-57 224.2 205 56.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 9.3e-57 224.2 252 49.6
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 9.3e-57 224.2 195 55.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-56 223.8 196 57.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.7e-56 222.6 194 57.7
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.6e-56 222.2 192 56.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.6e-56 222.2 192 57.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 7.9e-56 221.1 192 58.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.0e-55 220.7 194 56.2
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 205 62.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 196 56.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.3e-55 219.5 192 56.2
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.0e-55 219.2 183 57.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.0e-55 219.2 195 56.4
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.9e-55 218.8 192 56.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 6.7e-55 218.0 194 55.7
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 8.7e-55 217.6 187 55.6
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.1e-54 217.2 205 55.1
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-54 217.2 203 53.2
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.3e-54 215.7 188 55.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.3e-54 215.3 196 55.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.3e-54 215.3 188 54.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.7e-54 214.9 194 54.6
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.3e-53 213.8 194 55.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 55.4
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.8e-53 211.8 196 55.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.8e-52 209.9 192 54.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.4e-52 209.5 195 54.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 3.1e-52 209.1 193 52.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.1e-52 209.1 194 53.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.1e-52 209.1 181 54.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 5.3e-52 208.4 192 55.2
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.9e-52 208.0 196 53.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 6.9e-52 208.0 194 53.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.1e-52 207.6 192 54.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.1e-52 207.6 195 50.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.2e-51 207.2 194 53.1
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.2e-51 207.2 204 53.9
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.0e-51 206.5 194 52.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.9e-51 204.9 173 59.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-50 203.8 191 54.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-50 203.0 191 53.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-50 202.6 195 49.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-50 201.4 191 53.4
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 55.0
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-49 199.1 191 52.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.5e-49 198.4 195 51.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 7.2e-49 198.0 192 51.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 9.4e-49 197.6 174 55.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 191 51.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-48 196.4 191 51.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.7e-48 196.1 146 65.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.9e-48 194.5 194 52.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 188 49.5
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.0e-47 192.6 182 54.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.9e-47 192.2 202 47.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.1e-47 191.8 194 51.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 191 52.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 193 51.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-46 188.7 197 50.8
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 9.7e-46 187.6 186 50.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-45 186.8 191 51.8
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-45 186.8 194 49.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.2e-45 186.4 199 45.2
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.8e-45 186.0 188 50.0
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.8e-45 185.3 195 52.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.8e-45 185.3 188 48.9
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.3e-45 184.9 169 56.2
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 8.2e-45 184.5 186 49.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 8.2e-45 184.5 199 44.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.1e-44 184.1 186 49.5
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-44 183.7 195 50.3
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.4e-44 183.7 192 50.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.4e-44 183.0 194 51.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.1e-44 182.6 167 56.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 4.1e-44 182.2 195 50.8
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 9.1e-44 181.0 186 47.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.2e-43 180.6 143 58.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.0e-43 179.9 188 47.9
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.6e-43 179.5 186 47.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 2.6e-43 179.5 172 55.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.6e-43 179.5 192 47.9
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.4e-43 179.1 188 47.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.7e-42 176.8 187 48.7
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.4e-41 173.7 198 46.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.2e-41 172.2 204 44.6
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 7.2e-41 171.4 204 44.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.7e-40 168.7 164 54.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-39 167.2 163 50.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.8e-39 166.8 206 44.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.0e-39 166.0 141 58.2
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.2e-39 165.2 194 47.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-38 163.7 201 46.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.4e-38 162.2 165 49.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.3e-37 160.6 199 41.2
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.1e-36 156.0 154 53.2
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 7.0e-36 154.8 189 45.5
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-34 150.2 165 46.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.5e-34 147.9 150 47.3
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.2e-33 146.0 127 52.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-32 143.3 134 53.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.6e-32 142.5 188 41.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.0e-31 139.0 157 49.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 9.1e-28 127.9 114 54.4
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.1e-20 102.4 108 52.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.2e-17 91.7 193 32.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.6e-16 90.5 188 32.4
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.0e-15 85.9 165 37.0
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.2e-15 85.5 185 35.1
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.5e-14 84.0 181 32.6
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-14 82.4 105 45.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 4.9e-13 79.0 204 29.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 4.9e-13 79.0 96 44.8
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-12 77.0 83 47.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.1e-12 75.9 76 51.3
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-06 57.8 98 38.8
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-06 57.4 86 40.7


User provided reference genes

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