Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.2e-266 920.2 464 100.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 1.0e-199 700.3 533 70.9
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 6.5e-199 697.6 535 70.1
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 1.1e-198 696.8 533 70.2
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.5e-198 695.7 533 70.0
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 3.2e-198 695.3 533 70.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 4.7e-197 691.4 533 69.4
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 4.7e-197 691.4 533 69.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 4.7e-197 691.4 535 69.9
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 1.8e-196 689.5 533 69.2
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.8e-196 689.5 560 67.0
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.8e-196 689.5 535 69.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 3.0e-196 688.7 534 69.5
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 4.0e-196 688.3 533 69.8
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 5.2e-196 688.0 533 69.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 8.8e-196 687.2 533 69.0
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 1.2e-195 686.8 533 68.9
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.2e-195 686.8 533 69.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 1.5e-195 686.4 533 68.7
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 2.0e-195 686.0 533 68.9
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 2.0e-195 686.0 533 69.2
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 2.6e-195 685.6 533 68.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 2.6e-195 685.6 533 68.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 2.6e-195 685.6 533 68.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 3.4e-195 685.3 535 69.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.4e-195 684.9 533 69.0
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 5.7e-195 684.5 533 69.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 5.7e-195 684.5 533 69.4
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 7.5e-195 684.1 535 69.2
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 1.3e-194 683.3 535 69.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.3e-194 683.3 533 69.6
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.3e-194 683.3 533 68.1
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 1.3e-194 683.3 535 68.8
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 2.2e-194 682.6 533 68.9
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 2.2e-194 682.6 532 68.6
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 2.8e-194 682.2 533 69.0
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.7e-194 681.8 533 70.0
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 4.8e-194 681.4 533 68.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 4.8e-194 681.4 533 68.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 6.3e-194 681.0 535 68.8
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 1.1e-193 680.2 532 68.0
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-193 680.2 535 69.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 1.4e-193 679.9 533 68.3
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 1.8e-193 679.5 535 69.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 2.4e-193 679.1 535 68.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 5.4e-193 677.9 533 68.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 9.1e-193 677.2 537 68.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 1.2e-192 676.8 533 68.5
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.6e-192 676.4 533 68.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 2.0e-192 676.0 533 67.7
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.0e-192 676.0 533 68.7
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 2.7e-192 675.6 535 68.0
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 2.7e-192 675.6 533 67.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 3.5e-192 675.2 533 67.5
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 4.5e-192 674.9 535 68.4
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 4.5e-192 674.9 537 68.2
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 5.9e-192 674.5 533 67.2
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 1.0e-191 673.7 535 67.7
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.0e-191 673.7 533 68.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 1.0e-191 673.7 533 68.5
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 1.3e-191 673.3 535 68.2
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.7e-191 672.9 533 67.5
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 1.7e-191 672.9 531 69.1
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 2.2e-191 672.5 535 68.2
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.8e-191 671.8 533 67.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 5.0e-191 671.4 535 67.5
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 5.0e-191 671.4 529 68.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 5.0e-191 671.4 533 67.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 5.0e-191 671.4 533 67.0
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 6.5e-191 671.0 535 67.9
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 8.5e-191 670.6 533 67.0
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 8.5e-191 670.6 535 67.5
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 8.5e-191 670.6 535 68.0
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 8.5e-191 670.6 535 66.9
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-190 670.2 535 67.7
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-190 670.2 535 67.7
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 1.1e-190 670.2 535 67.7
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.5e-190 669.8 527 68.1
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.9e-190 669.5 535 67.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.9e-190 669.5 533 67.5
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 3.2e-190 668.7 533 67.4
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 5.5e-190 667.9 535 67.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 9.4e-190 667.2 543 66.9
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.2e-189 666.8 533 67.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 2.1e-189 666.0 535 67.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 3.6e-189 665.2 533 66.8
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 4.7e-189 664.8 535 67.7
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 8.0e-189 664.1 535 66.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 8.0e-189 664.1 527 67.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.3e-188 662.5 535 66.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 3.0e-188 662.1 535 66.5
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 6.8e-188 661.0 527 67.2
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 8.8e-188 660.6 535 66.5
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 8.8e-188 660.6 535 68.2
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 2.0e-187 659.4 535 67.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 4.4e-187 658.3 535 67.7
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 9.8e-187 657.1 535 66.2
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.8e-185 652.9 533 66.8
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 5.4e-185 651.4 533 66.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 2.3e-180 636.0 533 64.9
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 2.3e-180 636.0 535 64.5
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 4.0e-180 635.2 535 63.9
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.3e-178 630.2 535 64.3
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.7e-178 629.8 533 63.6
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.2e-177 625.5 532 64.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.2e-177 625.5 535 64.5
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.1e-174 617.1 533 62.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 7.3e-174 614.4 477 68.1
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.0e-172 610.5 537 61.8
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.1e-164 582.4 544 58.6
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.5e-160 568.9 534 58.1
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.4e-153 546.2 505 62.2
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.7e-152 542.7 437 67.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 5.6e-150 535.0 510 58.2
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.7e-146 523.5 376 72.6
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 9.6e-142 507.7 538 53.9
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.9e-134 483.4 392 65.6
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.2e-133 478.4 541 49.5
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.5e-118 429.9 414 63.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.3e-117 427.6 446 57.2
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.1e-117 426.8 444 56.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.2e-114 416.8 331 73.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.5e-110 404.1 486 53.3
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.1e-104 383.6 541 43.1
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.5e-91 339.7 266 70.3
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.7e-75 287.0 150 90.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 7.7e-75 285.4 213 74.2
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.7e-75 285.4 150 90.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.2e-74 283.9 150 88.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 9.5e-65 251.9 485 35.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.1e-44 182.6 111 82.0
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.2e-44 182.2 97 87.6
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.3e-41 173.3 210 47.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-40 171.0 136 67.6
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.1e-39 168.7 102 79.4
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 4.4e-38 163.3 90 91.1
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.9e-37 160.6 116 70.7
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.2e-36 157.1 85 89.4
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.1e-32 142.5 86 80.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 5.8e-30 136.3 75 88.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.3e-26 125.2 63 93.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 5.6e-25 119.8 61 90.2
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.4e-23 115.2 77 71.4
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 9.0e-23 112.5 146 46.6
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.6e-22 110.9 84 67.9
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.6e-16 91.7 49 85.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.4e-15 88.6 51 80.4
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 3.2e-12 77.4 74 55.4
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.3e-10 71.2 63 55.6
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.1e-10 70.1 159 34.0
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 8.7e-10 69.3 39 87.2
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-08 65.1 43 67.4


User provided reference genes

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