Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 0.0e+00 1192.9 625 100.0
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.9e-274 947.6 577 86.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.6e-155 553.9 586 55.1
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.3e-146 524.2 574 51.0
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.6e-136 489.6 581 50.9
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.1e-135 488.0 579 51.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 3.8e-133 479.6 577 50.6
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.3e-130 470.3 574 47.6
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 2.5e-129 466.8 574 49.5
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.5e-129 466.8 580 48.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.3e-129 466.5 572 49.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.6e-129 465.7 580 50.5
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.3e-129 465.3 571 49.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.3e-128 464.5 570 48.6
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.1e-128 463.8 580 51.2
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.6e-128 463.0 585 49.1
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.1e-127 461.5 568 50.9
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.5e-126 457.6 574 50.2
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.5e-126 457.6 577 48.2
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.6e-126 456.8 609 48.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.6e-126 456.8 554 50.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.1e-124 451.4 572 46.0
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.4e-124 450.3 575 46.8
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 5.4e-124 449.1 585 49.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 9.3e-124 448.4 578 49.0
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.2e-123 448.0 572 46.5
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 6.0e-123 445.7 590 47.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.0e-122 444.9 573 46.4
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.3e-122 444.5 572 47.6
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 2.3e-122 443.7 576 45.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 5.1e-122 442.6 538 52.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.1e-121 441.4 620 43.7
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.9e-121 440.7 571 46.8
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 2.5e-121 440.3 576 49.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 3.3e-121 439.9 585 44.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 4.3e-121 439.5 582 46.2
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 4.3e-121 439.5 552 48.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.8e-120 436.8 557 44.3
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 3.7e-120 436.4 582 46.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 1.4e-119 434.5 550 47.3
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.4e-119 434.5 574 46.0
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.1e-119 433.3 586 43.5
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.1e-119 433.3 597 45.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.8e-117 426.4 592 45.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 6.4e-117 425.6 578 47.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.9e-116 424.1 551 45.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 3.2e-116 423.3 551 45.2
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.2e-116 423.3 572 47.2
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 4.2e-116 422.9 585 43.2
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 7.1e-116 422.2 592 44.9
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 2.7e-115 420.2 581 45.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.7e-115 420.2 553 45.4
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.7e-115 420.2 544 46.9
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.7e-115 420.2 549 45.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.7e-115 420.2 572 44.6
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.9e-114 416.4 571 45.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.9e-113 414.1 716 39.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.3e-113 412.9 577 46.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.8e-112 410.2 591 46.5
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 5.3e-111 406.0 583 42.9
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 9.0e-111 405.2 600 42.7
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.2e-110 404.8 547 43.7
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.6e-110 403.7 586 43.7
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 3.4e-110 403.3 558 42.5
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.2e-109 400.6 613 40.8
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.9e-109 400.2 610 41.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 3.8e-109 399.8 579 42.0
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.1e-108 398.3 549 43.9
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.4e-108 397.9 581 44.6
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.9e-108 397.5 598 41.3
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 4.2e-108 396.4 601 41.6
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 7.1e-108 395.6 577 44.4
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.2e-107 394.8 599 40.4
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.6e-107 394.4 555 42.7
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.1e-107 394.0 571 42.6
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.1e-107 394.0 574 41.5
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.7e-107 393.7 554 42.1
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.5e-107 393.3 554 42.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.0e-106 391.7 555 42.5
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.3e-106 391.3 555 42.9
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.8e-106 391.0 613 40.6
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.3e-106 390.6 554 42.6
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.0e-106 390.2 571 43.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.9e-106 389.8 599 40.9
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 6.7e-106 389.0 555 42.0
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 6.7e-106 389.0 555 42.0
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.1e-105 388.3 563 41.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 6.3e-104 382.5 600 41.5
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 5.3e-103 379.4 574 40.9
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.5e-102 377.9 582 41.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 8.5e-101 372.1 587 40.4
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 5.5e-100 369.4 618 38.2
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.4e-98 364.8 511 44.0
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.0e-97 360.9 552 42.4
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.3e-97 359.8 578 38.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.7e-97 359.4 547 40.6
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.8e-96 357.1 583 41.0
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.1e-95 355.1 499 44.3
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.0e-94 350.9 582 41.2
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.0e-93 348.6 456 43.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 3.8e-93 346.7 590 39.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 3.2e-92 343.6 593 39.0
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 5.5e-92 342.8 570 37.4
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.9e-91 339.0 652 35.1
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.7e-89 332.8 594 39.9
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 7.4e-89 332.4 586 36.7
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 4.1e-87 326.6 320 51.2
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 7.7e-86 322.4 310 51.3
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.9e-85 320.5 571 39.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.8e-82 311.2 552 37.9
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.3e-82 310.8 488 41.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.1e-79 300.1 547 37.3
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.0e-78 297.7 577 36.0
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-76 292.0 533 37.0
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.0e-73 281.2 649 30.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 4.8e-72 276.6 614 32.6
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.0e-69 268.9 503 35.0
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.8e-64 250.8 366 38.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 4.5e-62 243.4 657 28.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.0e-61 242.3 565 30.1
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.7e-61 241.5 478 37.0
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.3e-61 241.1 460 36.7
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.2e-55 220.7 555 31.2
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 3.2e-55 220.7 272 40.8
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.2e-48 198.0 206 48.1
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 7.5e-41 172.9 279 36.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.9e-39 168.3 564 26.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.4e-39 167.9 442 32.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 9.2e-39 166.0 289 34.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 8.6e-37 159.5 150 51.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.1e-36 159.1 170 47.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.0e-34 150.6 527 25.6
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 5.2e-34 150.2 162 58.6
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 6.4e-32 143.3 187 48.7
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 6.8e-26 123.2 143 46.9
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.9e-23 115.2 292 28.1
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.3e-21 109.0 214 29.4
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.4e-17 94.4 80 53.8
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.4e-17 94.4 80 53.8
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 7.8e-14 83.2 125 43.2
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 7.9e-06 56.6 77 37.7


User provided reference genes

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