Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.5e-74 280.8 135 100.0
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.1e-61 240.0 124 93.5
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 5.6e-58 227.6 136 83.1
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 5.6e-58 227.6 136 83.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.1e-56 221.9 125 84.8
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.1e-56 221.9 125 84.8
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 4.0e-56 221.5 125 84.0
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 4.0e-56 221.5 125 84.8
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 5.2e-56 221.1 125 84.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 5.2e-56 221.1 124 85.5
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 6.8e-56 220.7 115 89.6
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.8e-56 220.7 125 84.0
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.5e-55 219.5 124 84.7
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.0e-55 219.2 124 84.7
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.8e-55 217.6 120 86.7
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 9.8e-55 216.9 125 83.2
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 9.8e-55 216.9 125 84.8
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.3e-54 216.5 125 81.6
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.7e-54 216.1 125 84.0
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.7e-54 216.1 124 83.1
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.7e-54 216.1 136 79.4
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.7e-54 214.9 125 84.0
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.9e-54 214.5 124 83.1
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.9e-54 214.5 125 81.6
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 6.4e-54 214.2 124 83.1
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.1e-53 213.4 124 83.9
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.4e-53 213.0 124 83.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.4e-53 213.0 114 88.6
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.9e-53 212.6 125 81.6
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.9e-53 212.6 124 82.3
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.4e-53 212.2 124 83.9
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.4e-53 212.2 116 85.3
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.2e-53 211.8 124 83.1
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 7.0e-53 210.7 117 82.9
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 7.0e-53 210.7 136 78.7
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 9.2e-53 210.3 125 80.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 9.2e-53 210.3 116 84.5
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.2e-52 209.9 129 79.1
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.2e-52 209.9 125 81.6
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.2e-52 209.9 124 80.6
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 2.0e-52 209.1 126 77.8
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.0e-52 209.1 112 88.4
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 2.0e-52 209.1 121 81.8
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 2.7e-52 208.8 122 81.1
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 2.7e-52 208.8 116 83.6
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.7e-52 208.8 125 79.2
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 3.5e-52 208.4 125 79.2
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 3.5e-52 208.4 125 79.2
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 4.6e-52 208.0 121 81.8
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 4.6e-52 208.0 121 81.8
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 4.6e-52 208.0 121 81.8
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 4.6e-52 208.0 122 81.1
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 4.6e-52 208.0 125 77.6
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 6.0e-52 207.6 125 81.6
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 1.0e-51 206.8 128 78.1
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.0e-51 206.8 113 85.8
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.0e-51 206.8 124 81.5
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.3e-51 206.5 125 80.8
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.3e-51 206.5 122 79.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 1.7e-51 206.1 114 83.3
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 2.3e-51 205.7 114 86.8
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 2.3e-51 205.7 114 85.1
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 3.9e-51 204.9 116 82.8
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 3.9e-51 204.9 114 83.3
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 5.0e-51 204.5 124 79.0
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 6.6e-51 204.1 116 81.9
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 8.6e-51 203.8 124 80.6
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 8.6e-51 203.8 125 79.2
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.5e-50 203.0 114 82.5
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 2.5e-50 202.2 125 76.0
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 2.5e-50 202.2 125 76.0
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 2.5e-50 202.2 124 77.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 3.3e-50 201.8 125 76.0
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 3.3e-50 201.8 125 76.0
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 4.3e-50 201.4 114 80.7
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.3e-50 201.4 125 76.0
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 5.6e-50 201.1 133 71.4
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 5.6e-50 201.1 125 75.2
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 5.6e-50 201.1 125 75.2
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 5.6e-50 201.1 125 75.2
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 7.3e-50 200.7 125 74.4
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 9.5e-50 200.3 115 81.7
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.2e-49 199.9 114 82.5
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.2e-49 199.9 114 82.5
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.2e-49 199.9 125 78.4
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.6e-49 199.5 133 69.9
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-49 199.1 125 74.4
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 2.1e-49 199.1 124 78.2
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.7e-49 198.0 125 73.6
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 6.2e-49 197.6 125 72.8
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 6.2e-49 197.6 125 76.0
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.4e-48 196.4 124 77.4
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.4e-48 196.4 125 75.2
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.1e-48 195.3 164 62.8
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 3.1e-48 195.3 114 82.5
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 4.0e-48 194.9 124 78.2
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.2e-48 194.5 124 78.2
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 6.8e-48 194.1 124 76.6
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.2e-47 193.4 121 76.0
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.2e-47 193.4 124 75.8
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.5e-47 193.0 124 77.4
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.5e-47 193.0 116 80.2
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.5e-47 190.7 114 77.2
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 7.5e-47 190.7 117 78.6
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 9.8e-47 190.3 113 79.6
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 1.3e-46 189.9 112 78.6
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.7e-46 189.5 113 80.5
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.2e-46 189.1 113 78.8
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.2e-46 189.1 113 78.8
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.9e-46 188.7 129 71.3
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 3.7e-46 188.3 118 77.1
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.9e-46 188.0 124 71.8
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 4.1e-45 184.9 113 77.0
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 5.4e-45 184.5 118 75.4
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 7.1e-45 184.1 113 77.9
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.6e-44 181.4 123 75.6
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.2e-41 173.3 234 44.9
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 3.6e-41 171.8 112 72.3
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 8.1e-41 170.6 99 81.8
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.1e-40 170.2 234 43.6
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 3.4e-39 165.2 109 72.5
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.1e-34 150.2 124 60.5
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.1e-34 150.2 120 60.8
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 4.3e-34 148.3 146 54.8
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.1e-33 146.0 113 67.3
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.2e-32 141.4 79 83.5
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 5.2e-32 141.4 105 58.1
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 5.8e-31 137.9 77 84.4
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 5.8e-31 137.9 77 85.7
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.9e-31 137.1 82 76.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.8e-30 135.2 82 74.4
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.1e-28 129.4 82 73.2
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 6.0e-28 127.9 97 60.8
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.1e-26 123.6 77 77.9
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.3e-25 120.2 112 53.6
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 8.1e-25 117.5 82 72.0
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.4e-16 89.4 49 83.7
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.5e-12 75.5 49 71.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.9e-12 74.3 54 64.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.0e-11 73.9 52 67.3
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 2.3e-11 72.8 66 47.0
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 1.1e-10 70.5 44 72.7
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-10 70.5 44 75.0
Pp3c6_9300 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.0e-07 59.7 69 40.6
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.3e-06 57.0 38 71.1
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 8.4e-06 54.3 34 76.5


User provided reference genes

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