Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.6e-311 1070.5 555 100.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 9.0e-272 939.9 577 86.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.3e-149 532.7 571 55.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.8e-142 510.4 574 51.7
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 8.0e-135 485.0 556 51.8
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.0e-134 484.6 557 50.6
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.8e-132 475.7 562 49.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.3e-129 467.6 554 49.6
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.2e-128 463.0 566 49.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 3.6e-127 459.5 587 48.2
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 4.7e-127 459.1 572 49.0
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.0e-126 456.4 553 48.5
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 8.8e-126 454.9 557 49.6
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 8.8e-126 454.9 559 48.3
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 2.0e-125 453.8 564 48.8
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.0e-125 453.8 552 47.8
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 9.7e-125 451.4 536 49.8
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.3e-124 451.1 553 48.1
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.8e-124 449.9 557 48.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.1e-123 448.0 572 48.4
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 3.1e-123 446.4 569 46.2
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 5.3e-123 445.7 559 47.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.1e-123 444.9 571 48.7
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.5e-122 443.0 569 47.3
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 7.7e-122 441.8 567 47.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.0e-121 441.4 563 47.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.2e-121 440.3 562 47.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 2.2e-121 440.3 558 47.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.2e-121 440.3 514 52.3
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.9e-121 439.9 560 46.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 2.9e-121 439.9 570 47.0
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 3.8e-121 439.5 552 48.0
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 4.2e-120 436.0 558 48.7
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 9.4e-120 434.9 534 48.5
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 2.7e-119 433.3 560 45.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 6.1e-119 432.2 554 46.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 6.1e-119 432.2 533 47.8
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 6.8e-118 428.7 565 45.3
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 9.8e-117 424.9 563 45.5
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.3e-116 424.5 560 46.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.7e-116 424.1 554 47.8
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 3.7e-116 422.9 555 45.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.8e-115 420.6 584 44.2
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.8e-115 420.6 567 46.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-115 419.5 531 46.1
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.0e-115 418.7 542 46.1
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.5e-114 416.4 567 45.9
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.9e-114 415.6 551 46.1
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.3e-113 414.5 550 44.9
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.3e-113 414.5 613 42.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 8.6e-113 411.8 557 44.9
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.5e-112 411.0 530 45.8
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.9e-112 410.6 560 44.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.5e-112 410.2 540 44.8
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.3e-112 409.8 536 46.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.2e-112 409.5 556 46.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.2e-111 407.9 560 45.4
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 8.0e-111 405.2 533 44.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 4.4e-109 399.4 559 45.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.3e-108 397.9 598 41.8
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.8e-108 396.7 543 45.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.1e-107 394.8 562 43.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.4e-107 394.4 716 38.5
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.4e-107 394.4 545 44.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.8e-107 394.0 562 44.3
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 3.1e-107 393.3 521 44.7
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 7.0e-107 392.1 545 44.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 7.0e-107 392.1 552 43.7
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.2e-106 391.3 553 43.4
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.0e-106 390.6 597 42.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.7e-106 390.2 597 40.4
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 4.5e-106 389.4 568 42.4
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 7.8e-106 388.7 581 41.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 6.6e-105 385.6 533 43.7
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 6.6e-105 385.6 533 43.7
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 6.6e-105 385.6 562 42.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 8.6e-105 385.2 533 43.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 8.6e-105 385.2 552 42.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.5e-104 383.6 543 43.1
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.3e-104 383.3 542 43.0
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 7.3e-104 382.1 539 44.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 7.3e-104 382.1 542 42.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.2e-103 381.3 576 39.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.8e-102 377.5 577 40.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 3.0e-102 376.7 554 42.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 3.0e-102 376.7 587 40.0
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 8.9e-102 375.2 545 41.5
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 8.9e-102 375.2 597 39.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 9.8e-101 371.7 569 40.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.9e-100 370.2 573 41.2
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.7e-100 369.8 588 39.6
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.5e-98 363.2 618 38.2
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.5e-96 357.8 565 38.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-95 354.8 524 42.2
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.8e-95 353.6 497 44.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.8e-95 353.6 555 40.9
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.8e-94 350.9 555 38.7
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.1e-94 350.1 480 44.8
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.1e-94 350.1 572 41.1
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.4e-93 346.7 561 40.8
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.8e-93 345.9 443 45.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 5.4e-91 339.3 608 36.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.4e-91 339.3 569 39.2
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.3e-88 330.1 656 34.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 5.6e-88 329.3 542 39.1
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 8.9e-86 322.0 289 54.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.8e-85 319.3 580 39.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.1e-83 315.1 310 50.6
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-82 311.6 553 38.3
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.6e-82 311.2 543 39.2
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.3e-81 308.1 467 41.5
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.2e-78 296.2 562 35.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-77 294.7 524 38.9
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 9.9e-77 292.0 512 37.9
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 7.6e-69 265.8 649 30.4
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.7e-68 264.6 484 36.6
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.2e-67 260.4 611 31.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.4e-62 244.2 447 38.5
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.5e-61 241.5 404 35.9
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.8e-60 236.9 457 35.4
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 6.0e-58 229.6 652 29.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.8e-57 228.0 543 31.7
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.3e-55 221.9 533 31.9
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.8e-54 218.0 272 40.8
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 4.8e-47 193.4 206 47.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 5.1e-41 173.3 279 35.5
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.3e-40 170.2 422 32.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.3e-36 158.7 145 52.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.2e-36 157.9 289 33.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.9e-36 157.5 549 26.4
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.1e-35 155.6 170 47.1
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.0e-33 149.1 162 58.0
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.0e-33 149.1 503 25.0
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.4e-30 137.9 179 49.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 7.2e-27 126.3 143 48.3
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 7.4e-24 116.3 292 28.4
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.6e-21 107.8 164 32.9
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 9.7e-16 89.4 80 51.2
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 9.7e-16 89.4 80 51.2
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 5.0e-12 77.0 129 41.1


User provided reference genes

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