Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.1e-154 548.1 367 100.0
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 8.2e-112 407.9 361 82.0
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.4e-111 407.1 363 83.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.3e-111 405.2 363 82.4
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 5.3e-111 405.2 380 79.7
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 6.9e-111 404.8 368 81.2
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.5e-110 403.7 362 82.9
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.0e-110 403.3 364 82.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 4.5e-110 402.1 368 81.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.0e-109 401.0 364 80.8
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 5.0e-109 398.7 365 81.6
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 6.5e-109 398.3 364 80.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.1e-108 397.5 363 82.4
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.9e-108 396.7 362 81.8
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.2e-108 396.0 364 79.9
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 7.2e-108 394.8 368 81.0
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-107 394.0 363 81.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.7e-107 392.9 364 79.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.7e-107 392.9 366 79.5
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.6e-107 392.5 373 78.6
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.6e-107 392.5 362 82.3
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 4.6e-107 392.1 365 80.5
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.1e-107 391.7 366 79.2
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.1e-107 391.7 366 78.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.1e-107 391.7 366 79.0
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 7.9e-107 391.3 366 79.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.9e-107 391.3 365 79.7
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-106 390.6 366 78.7
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.8e-106 390.2 380 77.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.8e-106 390.2 362 80.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.3e-106 389.8 362 81.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.3e-106 389.8 363 81.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.3e-106 389.8 363 78.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-106 389.4 378 78.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-106 389.4 378 78.6
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.9e-106 389.0 362 64.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 8.7e-106 387.9 363 57.9
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.9e-105 386.7 363 80.2
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 2.5e-105 386.3 362 80.1
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.3e-105 386.0 383 77.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 7.4e-105 384.8 363 78.0
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.8e-104 382.9 364 79.1
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.8e-104 382.1 362 79.3
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.8e-103 380.2 348 81.6
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.3e-103 378.6 361 79.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 5.3e-103 378.6 381 76.4
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 9.1e-103 377.9 337 83.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 9.1e-103 377.9 397 53.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.2e-102 377.5 378 75.9
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.5e-102 377.1 362 77.6
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.4e-102 375.9 380 76.8
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.9e-102 375.2 377 77.5
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 5.9e-102 375.2 338 82.5
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.9e-102 375.2 364 77.5
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.0e-101 374.4 362 78.2
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.0e-101 374.4 361 77.6
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.2e-101 373.2 362 76.5
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.9e-101 372.9 363 79.9
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.9e-101 372.9 361 77.6
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.0e-101 372.1 370 77.6
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 5.0e-101 372.1 362 78.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.9e-100 370.2 332 82.8
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.9e-100 370.2 358 79.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.9e-100 370.2 358 79.9
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.5e-100 369.8 362 78.5
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.2e-100 368.2 335 80.3
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 9.4e-100 367.9 358 79.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 9.4e-100 367.9 379 74.1
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.7e-99 366.3 339 82.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 7.9e-99 364.8 362 75.4
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 7.9e-99 364.8 266 69.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-98 364.0 324 86.1
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-98 363.2 324 85.8
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-98 363.2 324 85.8
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.0e-98 362.8 324 85.8
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.0e-97 360.1 346 78.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.0e-97 360.1 367 75.2
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 2.6e-97 359.8 382 73.3
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 4.4e-97 359.0 361 76.2
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 9.7e-97 357.8 362 76.0
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.8e-96 355.5 249 71.9
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.8e-95 353.6 384 73.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.1e-95 352.4 356 75.6
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.9e-95 351.7 415 69.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 9.1e-95 351.3 325 82.2
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 9.1e-95 351.3 363 73.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.2e-94 350.9 364 61.5
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.0e-94 350.1 325 82.2
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.0e-93 347.8 261 69.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.3e-93 347.4 368 74.5
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 2.9e-93 346.3 225 75.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 5.0e-93 345.5 362 74.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.1e-92 344.4 379 72.3
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.1e-91 340.1 356 75.0
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 4.7e-91 339.0 319 82.1
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 7.9e-91 338.2 314 82.8
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 7.9e-91 338.2 314 83.1
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.3e-90 336.7 314 82.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 6.7e-90 335.1 320 80.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-89 333.6 320 80.6
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.0e-89 333.6 320 80.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.6e-89 333.2 397 68.5
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 4.4e-89 332.4 386 68.9
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.4e-89 332.4 304 85.9
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 9.7e-89 331.3 362 74.3
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.3e-88 330.9 314 82.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.8e-88 329.7 388 68.0
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.3e-85 320.9 427 66.5
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.9e-84 317.0 449 62.6
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.9e-84 317.0 449 62.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 9.4e-84 314.7 365 72.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.6e-83 312.8 307 81.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 4.4e-81 305.8 350 67.7
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 6.3e-80 302.0 317 69.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.0e-78 297.0 328 74.1
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.7e-77 293.9 314 76.8
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 4.4e-65 252.7 390 62.3
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.1e-63 248.1 390 62.1
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.6e-61 238.4 267 50.2
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 9.5e-60 235.0 160 71.9
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 6.4e-56 222.2 229 53.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.8e-55 220.7 362 39.0
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-52 209.9 159 64.2
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 4.7e-51 206.1 184 61.4
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 7.0e-47 192.2 370 37.3
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 3.5e-46 189.9 393 53.4
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.5e-44 184.5 142 66.2
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 4.7e-43 179.5 231 43.3
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-37 160.2 98 79.6
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-34 151.4 144 54.9
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-33 147.5 92 78.3
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 6.4e-32 142.5 364 32.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-31 140.2 89 76.4
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.2e-31 138.7 84 81.0
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 9.2e-31 138.7 145 53.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-30 136.7 81 79.0
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-29 133.7 136 55.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-27 126.3 66 86.4
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 9.0e-26 122.1 226 35.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-23 114.4 59 89.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-23 113.6 61 86.9
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 5.4e-23 112.8 93 67.7
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.1e-23 112.5 101 63.4
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.1e-23 112.5 61 85.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.1e-21 106.3 155 94.2
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.0e-17 94.4 154 90.3
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-17 92.8 60 76.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.8e-11 73.2 60 55.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 6.9e-10 69.3 198 28.3
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-09 67.8 47 57.4
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.8e-08 63.5 62 43.5
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-07 60.1 50 50.0
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.2e-07 60.1 30 93.3
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-07 59.7 60 58.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-06 58.2 29 93.1
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.6e-06 58.2 30 90.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.6e-06 58.2 43 65.1
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.5e-06 57.0 60 45.0
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 4.6e-06 56.6 30 83.3


User provided reference genes

Program Settings