Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 3.8e-176 621.3 299 100.0
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.4e-130 468.0 288 75.3
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.7e-128 463.0 291 73.5
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.9e-127 459.5 293 73.7
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 1.2e-126 456.8 290 72.8
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 5.8e-124 448.0 291 70.4
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 4.3e-119 431.8 287 69.7
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 7.3e-119 431.0 293 69.3
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 9.6e-119 430.6 301 70.1
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.3e-118 430.3 298 69.5
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 3.6e-118 428.7 307 67.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 2.4e-117 426.0 288 68.4
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 5.3e-117 424.9 289 69.2
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.2e-116 423.7 292 67.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 1.5e-116 423.3 293 67.6
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.5e-116 423.3 289 67.1
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.6e-116 422.5 291 66.7
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 9.9e-116 420.6 290 67.9
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.3e-115 420.2 289 66.4
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.7e-115 419.9 286 67.1
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 2.9e-115 419.1 292 66.8
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.8e-115 418.7 292 65.8
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 6.4e-115 417.9 282 66.7
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.4e-114 416.8 296 67.9
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.9e-114 416.4 292 66.4
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 2.4e-114 416.0 288 69.1
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 3.2e-114 415.6 301 64.5
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 3.2e-114 415.6 295 66.1
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 3.2e-114 415.6 287 66.6
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 4.2e-114 415.2 297 64.3
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 5.4e-114 414.8 301 64.1
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 5.4e-114 414.8 283 68.2
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 7.1e-114 414.5 295 65.4
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 7.1e-114 414.5 294 66.3
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 9.3e-114 414.1 298 65.1
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 1.2e-113 413.7 293 65.2
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.1e-113 412.9 295 65.1
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 2.1e-113 412.9 297 65.3
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.1e-113 412.9 295 64.4
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 2.7e-113 412.5 289 64.7
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 4.6e-113 411.8 287 66.6
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 6.0e-113 411.4 289 64.7
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 6.0e-113 411.4 289 65.4
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 7.9e-113 411.0 295 65.1
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.0e-112 410.6 289 65.1
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.0e-112 410.6 296 63.9
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.3e-112 410.2 289 64.7
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.8e-112 409.8 294 65.6
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.8e-112 409.8 294 67.3
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.8e-112 409.8 289 66.1
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 5.1e-112 408.3 289 65.4
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.1e-112 408.3 282 64.9
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.1e-112 408.3 289 64.0
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 6.7e-112 407.9 290 65.9
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.1e-111 407.1 289 64.7
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.1e-111 407.1 289 64.4
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 1.1e-111 407.1 301 63.1
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 3.3e-111 405.6 295 63.1
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 4.3e-111 405.2 289 64.4
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 4.3e-111 405.2 292 64.0
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 4.3e-111 405.2 300 63.0
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 4.3e-111 405.2 290 65.5
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 7.4e-111 404.4 299 64.5
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 1.3e-110 403.7 289 65.4
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 3.7e-110 402.1 294 62.9
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 4.8e-110 401.7 302 60.3
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.2e-108 397.1 289 66.4
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.5e-108 396.7 285 63.9
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.6e-108 396.0 294 61.6
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 9.9e-108 394.0 288 63.2
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.1e-106 390.6 297 61.6
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 2.4e-106 389.4 295 62.7
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 3.2e-106 389.0 291 61.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 1.6e-105 386.7 298 60.1
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 2.7e-105 386.0 293 61.1
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 6.0e-105 384.8 290 63.8
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-103 380.2 289 61.9
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.4e-101 372.9 297 59.3
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.2e-100 370.5 305 58.0
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.3e-99 367.1 301 57.8
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.6e-97 360.1 231 72.3
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 3.0e-96 355.9 299 57.9
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 9.7e-95 350.9 279 61.6
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 3.8e-91 339.0 294 56.5
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 3.2e-90 335.9 247 62.3
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 7.9e-89 331.3 230 66.1
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 5.1e-88 328.6 300 55.0
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 3.4e-84 315.8 226 65.5
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 5.9e-84 315.1 224 66.1
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.9e-82 310.1 411 41.4
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.1e-77 294.3 269 52.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.1e-77 292.7 289 51.2
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 3.0e-72 276.2 195 66.7
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 1.1e-71 274.2 222 61.3
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 2.4e-69 266.5 255 49.8
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.8e-67 259.2 193 58.5
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 8.0e-65 251.5 198 58.1
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.0e-63 246.9 290 44.1
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 7.5e-63 245.0 280 44.6
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 5.0e-59 232.3 165 63.0
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.6e-57 227.3 254 48.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 8.8e-56 221.5 132 73.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 4.4e-55 219.2 126 75.4
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 3.5e-52 209.5 176 60.2
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 6.6e-51 205.3 274 40.9
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 1.1e-50 204.5 157 61.1
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 5.5e-50 202.2 165 58.8
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-48 198.0 126 64.3
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-48 198.0 126 64.3
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-48 198.0 126 64.3
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 5.7e-47 192.2 154 60.4
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-46 191.0 160 60.0
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.6e-41 174.1 102 71.6
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.6e-41 174.1 132 57.6
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.7e-35 154.1 125 55.2
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.0e-35 152.5 158 50.6
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 3.3e-34 149.8 114 66.7
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.3e-27 127.9 96 64.6
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.6e-25 119.8 101 56.4
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.2e-25 119.0 102 56.9
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.1e-25 118.6 101 56.4
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.1e-25 118.6 101 56.4
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 4.4e-23 112.8 134 44.8
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.1e-21 106.3 81 64.2
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.1e-21 106.3 86 59.3
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 9.5e-18 95.1 171 34.5
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 1.4e-16 91.3 74 58.1
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.6e-11 72.4 53 60.4
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.8e-09 66.2 46 58.7


User provided reference genes

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