Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.5e-228 795.8 388 100.0
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.1e-109 399.4 339 58.4
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 5.2e-109 398.7 334 58.4
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.4e-108 396.0 338 57.7
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.7e-105 386.3 354 54.2
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 8.7e-104 381.3 334 55.4
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 3.3e-103 379.4 335 57.3
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.2e-100 370.9 337 56.1
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.4e-100 369.0 338 54.7
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 7.6e-100 368.2 306 58.8
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 2.2e-99 366.7 338 54.1
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 6.4e-99 365.2 309 56.6
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 8.4e-99 364.8 345 53.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.1e-98 364.4 357 52.4
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.2e-97 360.9 344 52.3
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.6e-97 360.5 326 53.1
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.1e-97 360.1 334 54.2
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 3.5e-97 359.4 337 53.7
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 3.5e-97 359.4 340 52.9
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 4.6e-97 359.0 334 53.9
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.0e-96 357.8 338 55.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.3e-96 357.5 339 56.3
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.3e-96 356.7 340 52.6
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 3.9e-96 355.9 336 55.1
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.1e-96 355.5 324 53.4
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.7e-96 354.8 339 52.8
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 8.7e-96 354.8 328 55.5
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.7e-96 354.8 335 52.5
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-95 354.4 337 54.0
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 1.1e-95 354.4 324 53.1
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.5e-95 354.0 324 52.8
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.3e-95 352.8 341 51.3
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 4.3e-95 352.4 336 52.4
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 7.3e-95 351.7 339 51.9
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 7.3e-95 351.7 295 57.6
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.3e-94 350.9 311 53.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 1.6e-94 350.5 321 53.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.6e-94 350.5 334 52.7
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 4.8e-94 349.0 337 53.4
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 4.8e-94 349.0 318 55.3
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 6.2e-94 348.6 336 52.7
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.1e-93 347.8 317 53.3
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.4e-93 346.7 293 56.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 5.3e-93 345.5 336 52.4
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 2.0e-92 343.6 319 55.8
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.4e-92 342.8 321 53.0
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 5.8e-92 342.0 317 51.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.3e-91 340.9 317 53.0
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 2.2e-91 340.1 286 56.6
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.2e-91 340.1 354 50.6
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 2.2e-91 340.1 334 50.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 2.2e-91 340.1 311 53.4
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 3.8e-91 339.3 316 51.9
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 6.4e-91 338.6 309 55.0
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 8.4e-91 338.2 334 51.2
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.1e-90 337.8 309 51.1
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.4e-90 337.4 309 51.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.4e-90 337.4 334 49.4
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.9e-90 337.0 341 48.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.2e-90 336.3 337 50.4
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 4.2e-90 335.9 338 49.7
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.4e-90 335.5 338 52.1
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 7.1e-90 335.1 339 48.7
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 7.1e-90 335.1 317 51.4
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 9.3e-90 334.7 338 50.9
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 1.2e-89 334.3 339 48.7
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.2e-89 334.3 318 54.1
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.0e-88 331.3 340 47.6
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 2.3e-88 330.1 335 50.7
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 3.0e-88 329.7 341 51.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 1.1e-87 327.8 292 54.5
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 4.3e-87 325.9 360 47.5
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 7.4e-87 325.1 337 47.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 7.4e-87 325.1 337 47.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 7.4e-87 325.1 296 55.1
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.6e-86 323.9 336 50.0
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.1e-86 323.6 275 56.0
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 3.7e-86 322.8 325 51.4
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.8e-86 322.4 331 52.0
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.1e-85 321.2 339 47.5
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-85 321.2 288 54.2
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 4.0e-85 319.3 309 51.8
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 9.0e-85 318.2 339 47.5
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.2e-84 317.8 337 51.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.5e-84 317.4 337 48.7
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 2.0e-84 317.0 309 51.5
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 2.6e-84 316.6 347 49.3
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.6e-84 316.6 331 50.8
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 3.4e-84 316.2 337 48.7
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 3.4e-84 316.2 337 48.7
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 4.5e-84 315.8 334 51.5
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.0e-83 314.7 339 48.4
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.0e-83 314.7 312 50.6
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.7e-83 313.9 337 48.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 8.4e-83 311.6 345 50.4
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 3.2e-82 309.7 348 47.1
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.2e-82 309.3 281 55.9
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.6e-81 305.8 274 55.1
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.8e-80 303.9 320 47.8
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.1e-80 302.4 266 56.0
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.5e-79 300.8 329 45.9
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 1.9e-79 300.4 325 46.5
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 2.4e-77 293.5 270 55.6
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.9e-75 286.6 311 47.6
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.9e-75 286.6 320 46.6
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 4.9e-75 285.8 267 51.3
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 7.1e-74 282.0 334 46.7
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 9.3e-74 281.6 325 45.5
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.1e-73 280.4 263 51.3
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 4.6e-73 279.3 338 41.1
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 7.9e-73 278.5 343 46.4
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.0e-72 278.1 334 45.5
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.0e-72 276.6 337 47.5
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.9e-72 276.2 285 50.5
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 5.1e-72 275.8 335 47.2
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 5.1e-72 275.8 345 45.8
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.1e-71 274.6 334 42.8
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.5e-71 274.2 311 45.7
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.5e-71 273.5 345 45.8
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.3e-71 273.1 336 44.9
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 3.3e-71 273.1 334 45.5
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 5.7e-71 272.3 334 44.9
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 9.7e-71 271.6 330 44.2
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.1e-69 268.1 311 46.0
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.4e-69 266.9 331 44.4
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 3.1e-69 266.5 337 44.2
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-68 263.8 317 45.1
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-67 261.5 329 43.5
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-67 261.2 317 44.8
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.0e-67 259.2 335 45.7
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 2.5e-66 256.9 335 43.0
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 2.5e-66 256.9 335 43.0
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.5e-66 256.9 349 40.4
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.2e-65 254.6 341 39.0
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.7e-65 253.4 336 43.2
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.6e-65 253.1 318 43.7
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-65 253.1 313 45.4
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 4.6e-65 252.7 321 45.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.0e-64 251.5 335 41.2
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 1.8e-64 250.8 335 41.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.3e-64 250.4 339 41.9
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 5.1e-64 249.2 315 43.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 8.8e-64 248.4 264 48.1
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 8.2e-62 241.9 291 44.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.8e-61 240.7 218 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 5.3e-61 239.2 368 37.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.2e-60 238.0 323 40.2
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.2e-59 233.8 323 39.9
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.1e-58 231.5 320 35.6
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.4e-58 231.1 314 37.9
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 8.8e-56 221.9 285 39.3
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.7e-54 217.6 205 50.2
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.8e-53 214.2 326 39.6
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.6e-52 210.3 209 48.3
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.9e-50 204.1 271 38.4
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.9e-50 204.1 271 38.4
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 3.0e-48 196.8 297 36.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.9e-48 196.4 264 41.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 6.3e-46 189.1 191 49.7
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.9e-36 156.0 115 58.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-35 154.8 158 48.1
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.0e-32 145.2 133 57.9
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 6.3e-30 136.0 118 60.2
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 3.1e-29 133.7 115 54.8
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.6e-28 131.3 160 46.2
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 6.6e-27 125.9 80 65.0
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.2e-25 121.7 191 33.5
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.0e-24 117.1 148 41.2
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.2e-22 110.9 106 56.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 3.9e-19 100.1 70 60.0
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-13 81.6 62 58.1
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.0e-12 77.8 88 46.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.8e-09 67.4 103 35.9


User provided reference genes

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