Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2424 Ceratophyllum demersum HOM05D005561 ORTHO05D006834 2.2e-235 818.5 397 100.0
Nn5g31005 Nelumbo nucifera HOM05D005561 ORTHO05D006834 5.2e-104 382.1 574 39.4
CAN.G311.134 Capsicum annuum HOM05D005561 ORTHO05D006834 7.8e-100 368.2 575 38.8
Aqoxy5G00977 Aquilegia oxysepala HOM05D005561 ORTHO05D006834 2.3e-99 366.7 573 37.2
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 4.3e-98 362.5 574 37.6
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 4.3e-98 362.5 575 38.1
Lj4C7T6 Lonicera japonica HOM05D005561 ORTHO05D006834 9.5e-98 361.3 575 37.9
CSS0019163 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 2.1e-97 360.1 575 37.7
Solyc04g082580.3 Solanum lycopersicum HOM05D005561 ORTHO05D006834 2.1e-97 360.1 575 38.8
Sopen04g036210 Solanum pennellii HOM05D005561 ORTHO05D006834 2.1e-97 360.1 575 38.8
Sabra05G0196600 Salix brachista HOM05D005561 ORTHO05D006834 6.1e-97 358.6 575 38.3
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 1.0e-96 357.8 576 38.4
QL02p015136 Quercus lobata HOM05D005561 ORTHO05D006834 1.0e-96 357.8 572 38.3
PGSC0003DMG400009989 Solanum tuberosum HOM05D005561 ORTHO05D006834 1.4e-96 357.5 575 37.7
CANSAT78G2155 Cannabis sativa HOM05D005561 ORTHO05D006834 1.8e-96 357.1 573 39.1
Cpa.g.sc26.163 Carica papaya HOM05D005561 ORTHO05D006834 6.8e-96 355.1 563 38.4
FAN13G3253 Fragaria x ananassa HOM05D005561 ORTHO05D006834 6.8e-96 355.1 575 37.9
Potri.005G253500 Populus trichocarpa HOM05D005561 ORTHO05D006834 8.9e-96 354.8 575 37.9
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.0e-95 353.6 578 37.5
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.0e-95 353.6 577 38.0
PSO170G1066 Papaver somniferum HOM05D005561 ORTHO05D006834 2.6e-95 353.2 573 37.5
Prupe.5G009000 Prunus persica HOM05D005561 ORTHO05D006834 3.4e-95 352.8 576 37.8
FAN18G1577 Fragaria x ananassa HOM05D005561 ORTHO05D006834 9.8e-95 351.3 574 37.6
Haze_22832 Corylus avellana HOM05D005561 ORTHO05D006834 1.7e-94 350.5 575 37.7
RcHm_v2.0_Chr7g0215931 Rosa chinensis HOM05D005561 ORTHO05D006834 2.2e-94 350.1 575 37.0
Cfa014114 Carpinus fangiana HOM05D005561 ORTHO05D006834 2.9e-94 349.7 575 37.6
Rhsim06G0005100 Rhododendron simsii HOM05D005561 ORTHO05D006834 2.9e-94 349.7 575 35.8
Manes.05G124800 Manihot esculenta HOM05D005561 ORTHO05D006834 3.7e-94 349.4 575 37.4
COL.COLO4_35541 Corchorus olitorius HOM05D005561 ORTHO05D006834 4.9e-94 349.0 575 37.2
MBI05_g33302_MAGBIO Magnolia biondii HOM05D005561 ORTHO05D006834 4.9e-94 349.0 619 37.0
Ciclev10000678m.g Citrus clementina HOM05D005561 ORTHO05D006834 8.3e-94 348.2 578 38.2
Eucgr.F01790 Eucalyptus grandis HOM05D005561 ORTHO05D006834 8.3e-94 348.2 573 37.7
PSO210G6209 Papaver somniferum HOM05D005561 ORTHO05D006834 2.4e-93 346.7 561 37.4
Thecc.08G062600 Theobroma cacao HOM05D005561 ORTHO05D006834 3.2e-93 346.3 575 37.6
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 3.2e-93 346.3 575 36.2
Potri.002G007700 Populus trichocarpa HOM05D005561 ORTHO05D006834 9.2e-93 344.7 576 37.3
FAN04G1314 Fragaria x ananassa HOM05D005561 ORTHO05D006834 2.7e-92 343.2 564 37.6
GSVIVG01013397001 Vitis vinifera HOM05D005561 ORTHO05D006834 2.7e-92 343.2 424 45.8
TWI56G0057 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 4.6e-92 342.4 575 37.0
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 6.0e-92 342.0 576 36.8
DCAR_016786 Daucus carota HOM05D005561 ORTHO05D006834 6.0e-92 342.0 572 36.9
Duzib041G0482 Durio zibethinus HOM05D005561 ORTHO05D006834 6.0e-92 342.0 575 36.5
Duzib116G0146 Durio zibethinus HOM05D005561 ORTHO05D006834 6.0e-92 342.0 574 37.3
FAN08G1213 Fragaria x ananassa HOM05D005561 ORTHO05D006834 6.0e-92 342.0 564 36.9
Psat5g009720 Pisum sativum HOM05D005561 ORTHO05D006834 7.8e-92 341.7 584 37.0
FvH4_5g25640 Fragaria vesca HOM05D005561 ORTHO05D006834 1.0e-91 341.3 557 37.5
Ah.11g041760 Amaranthus hybridus HOM05D005561 ORTHO05D006834 1.7e-91 340.5 577 36.9
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 1.7e-91 340.5 563 37.5
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 3.0e-91 339.7 578 36.9
Gorai.002G114500 Gossypium raimondii HOM05D005561 ORTHO05D006834 3.9e-91 339.3 575 36.2
Gohir.D01G088800 Gossypium hirsutum HOM05D005561 ORTHO05D006834 5.0e-91 339.0 575 36.2
Gohir.A01G103500 Gossypium hirsutum HOM05D005561 ORTHO05D006834 2.5e-90 336.7 575 36.0
TWI36G1622 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 2.5e-90 336.7 575 36.9
Lj1g0007073 Lotus japonicus HOM05D005561 ORTHO05D006834 3.3e-90 336.3 572 35.8
CiPaw.07G135900 Carya illinoinensis HOM05D005561 ORTHO05D006834 4.3e-90 335.9 575 36.9
Cc10_g00480 Coffea canephora HOM05D005561 ORTHO05D006834 4.3e-90 335.9 572 37.6
Nitab4.5_0001208g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 4.3e-90 335.9 575 36.3
Ca_15401_v3 Cicer arietinum L. HOM05D005561 ORTHO05D006834 2.8e-89 333.2 579 36.4
Lalb_Chr11g0061481 Lupinus albus HOM05D005561 ORTHO05D006834 2.8e-89 333.2 581 36.5
ClCG08G009280 Citrullus lanatus HOM05D005561 ORTHO05D006834 3.6e-89 332.8 572 36.2
Nitab4.5_0000383g0380 Nicotiana tabacum HOM05D005561 ORTHO05D006834 3.6e-89 332.8 575 36.0
TPR.G38189 Trifolium pratense HOM05D005561 ORTHO05D006834 6.2e-89 332.0 578 36.7
MSTRG.22092 Avicennia marina HOM05D005561 ORTHO05D006834 8.0e-89 331.6 571 35.4
MD00G1113700 Malus domestica HOM05D005561 ORTHO05D006834 1.8e-88 330.5 577 37.1
MSTRG.992 Avicennia marina HOM05D005561 ORTHO05D006834 3.1e-88 329.7 526 36.5
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 3.1e-88 329.7 564 36.9
SalBow1G8439 Salvia bowleyana HOM05D005561 ORTHO05D006834 4.0e-88 329.3 572 36.5
SalBow7G4605 Salvia bowleyana HOM05D005561 ORTHO05D006834 4.0e-88 329.3 572 36.5
Duzib093G0247 Durio zibethinus HOM05D005561 ORTHO05D006834 5.2e-88 328.9 576 35.4
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 6.8e-88 328.6 572 36.2
CsaV3_6G031410 Cucumis sativus L. HOM05D005561 ORTHO05D006834 8.9e-88 328.2 572 35.5
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 8.9e-88 328.2 578 36.2
MELO3C026526.2 Cucumis melo HOM05D005561 ORTHO05D006834 1.5e-87 327.4 572 35.3
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 2.0e-87 327.0 573 36.1
Peaxi162Scf00680g00110 Petunia axillaris HOM05D005561 ORTHO05D006834 5.8e-87 325.5 519 38.7
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 7.5e-87 325.1 568 35.0
HanXRQChr15g0492491 Helianthus annuus HOM05D005561 ORTHO05D006834 2.2e-86 323.6 558 35.1
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 2.9e-86 323.2 563 36.6
PGR083G0762 Punica granatum HOM05D005561 ORTHO05D006834 2.9e-86 323.2 579 34.7
THA.LOC104801947 Tarenaya hassleriana HOM05D005561 ORTHO05D006834 8.3e-86 321.6 569 35.7
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 1.1e-85 321.2 564 36.0
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 1.2e-84 317.8 562 35.9
Lsat_1_v5_gn_9_45721 Lactuca sativa HOM05D005561 ORTHO05D006834 1.6e-84 317.4 577 36.0
Oeu026110.1 Olea europaea HOM05D005561 ORTHO05D006834 1.6e-84 317.4 428 43.2
Sed0010562 Sechium edule HOM05D005561 ORTHO05D006834 4.6e-84 315.8 574 34.5
Oeu016877.1 Olea europaea HOM05D005561 ORTHO05D006834 7.8e-84 315.1 535 37.0
Migut.N02971 Erythranthe guttata HOM05D005561 ORTHO05D006834 3.3e-82 309.7 558 34.2
Sabra02G0006100 Salix brachista HOM05D005561 ORTHO05D006834 5.6e-82 308.9 536 36.8
HanXRQChr06g0185211 Helianthus annuus HOM05D005561 ORTHO05D006834 3.6e-81 306.2 531 36.5
ATR0807G210 Amborella trichopoda HOM05D005561 ORTHO05D006834 6.2e-81 305.4 600 33.8
Atru.chr13.103 Acer truncatum HOM05D005561 ORTHO05D006834 1.1e-80 304.7 216 63.9
Lsat_1_v5_gn_2_1901 Lactuca sativa HOM05D005561 ORTHO05D006834 2.3e-80 303.5 475 38.7
Aa31LG9G12500 Aethionema arabicum HOM05D005561 ORTHO05D006834 3.1e-80 303.1 571 34.7
SalBow6G7068 Salvia bowleyana HOM05D005561 ORTHO05D006834 3.1e-80 303.1 575 35.3
Thhalv10003171m.g Eutrema salsugineum HOM05D005561 ORTHO05D006834 2.0e-79 300.4 562 34.3
ECA238G1647 Erigeron canadensis HOM05D005561 ORTHO05D006834 2.6e-79 300.1 531 35.0
SEGI_19604 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 5.8e-79 298.9 242 57.4
SEGI_32322 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 5.8e-79 298.9 242 57.4
AUR62042579 Chenopodium quinoa HOM05D005561 ORTHO05D006834 4.6e-76 289.3 462 38.5
unitig_22.g5815 Utricularia gibba HOM05D005561 ORTHO05D006834 7.8e-76 288.5 555 33.0
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 2.3e-75 287.0 401 41.6
BcaC04g22001 Brassica carinata HOM05D005561 ORTHO05D006834 3.9e-75 286.2 544 36.0
BolC9t55390H Brassica oleracea HOM05D005561 ORTHO05D006834 1.1e-74 284.6 545 36.0
C09p24980 Brassica napus HOM05D005561 ORTHO05D006834 1.9e-74 283.9 545 35.8
CARHR284980 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.2e-73 281.2 559 32.9
AL8G19230 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 8.1e-73 278.5 559 32.6
BcaNung05251 Brassica carinata HOM05D005561 ORTHO05D006834 8.1e-73 278.5 532 34.8
Carub.0008s0680 Capsella rubella HOM05D005561 ORTHO05D006834 1.1e-72 278.1 560 32.3
BcaB07g31083 Brassica carinata HOM05D005561 ORTHO05D006834 1.8e-72 277.3 547 34.6
AL8G19220 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 2.4e-72 276.9 560 32.5
AT5G42350 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 2.4e-72 276.9 560 32.5
A09p19610 Brassica napus HOM05D005561 ORTHO05D006834 3.1e-72 276.6 548 34.9
BraA09t37572Z Brassica rapa HOM05D005561 ORTHO05D006834 8.9e-72 275.0 548 34.1
Zm00001eb320670 Zea mays HOM05D005561 ORTHO05D006834 1.5e-71 274.2 212 57.1
AT5G42360 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 1.9e-69 267.3 560 32.0
Os09g0555300 Oryza sativa ssp. japonica HOM05D005561 ORTHO05D006834 2.4e-69 266.9 257 50.2
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 7.1e-69 265.4 552 32.4
Sp7g08210 Schrenkiella parvula HOM05D005561 ORTHO05D006834 1.6e-68 264.2 557 31.1
Ciclev10009595m.g Citrus clementina HOM05D005561 ORTHO05D006834 1.7e-62 244.2 177 63.8
Mapoly0107s0031 Marchantia polymorpha HOM05D005561 ORTHO05D006834 2.7e-60 236.9 222 51.4
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 8.1e-57 225.3 503 31.6
CARHR284990 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.4e-48 198.0 272 40.1
TAR376G0177 Trochodendron aralioides HOM05D005561 ORTHO05D006834 1.4e-40 171.4 113 70.8
TPR.G26790 Trifolium pratense HOM05D005561 ORTHO05D006834 8.5e-30 135.6 192 39.1
Medtr3g032780 Medicago truncatula HOM05D005561 ORTHO05D006834 1.6e-20 104.8 295 32.5
Mapoly1710s0002 Marchantia polymorpha HOM05D005561 ORTHO05D006834 8.2e-17 92.4 185 32.4
AagrBONN_evm.TU.Sc2ySwM_228.4410 Anthoceros agrestis HOM05D005561 ORTHO05D006834 4.2e-13 80.1 154 32.5
TAR376G1058 Trochodendron aralioides HOM05D005561 ORTHO05D006834 8.8e-11 72.4 102 41.2
VMungo1080G0280 Vigna mungo HOM05D005561 ORTHO05D006834 4.1e-08 63.5 96 35.4
Sc15g0004200 Simmondsia chinensis HOM05D005561 ORTHO05D006834 2.0e-07 61.2 110 32.7
unitig_736.g22264 Utricularia gibba HOM05D004302 ORTHO05D004939 5.9e-07 59.7 155 32.9
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 7.7e-07 59.3 230 23.9
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 7.7e-07 59.3 145 29.0
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 1.0e-06 58.9 119 26.1
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 1.0e-06 58.9 142 28.9
unitig_899.g15112 Utricularia gibba HOM05D004302 ORTHO05D004939 1.3e-06 58.5 148 32.4
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.7e-06 58.2 176 27.3
AagrBONN_evm.TU.Sc2ySwM_117.2355 Anthoceros agrestis HOM05D005500 ORTHO05D006906 2.2e-06 57.8 135 28.9
Prupe.1G085800 Prunus persica HOM05D005561 ORTHO05D006834 2.2e-06 57.8 85 42.4
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 2.9e-06 57.4 127 28.3
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 3.8e-06 57.0 143 27.3
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 3.8e-06 57.0 143 27.3


User provided reference genes

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