Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2021 Ceratophyllum demersum HOM05D003202 ORTHO05D003534 5.0e-93 344.4 164 100.0
TAR371G0708 Trochodendron aralioides HOM05D003202 ORTHO05D003534 3.1e-10 69.3 55 65.5
Ciclev10031405m.g Citrus clementina HOM05D003202 ORTHO05D003534 9.0e-10 67.8 53 60.4
MBI02_g05732_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 5.8e-09 65.1 55 61.8
Lj6C792T7 Lonicera japonica HOM05D003202 ORTHO05D003534 7.6e-09 64.7 54 61.1
Nn3g17166 Nelumbo nucifera HOM05D003202 ORTHO05D003534 9.9e-09 64.3 55 63.6
Nn4g23087 Nelumbo nucifera HOM05D003202 ORTHO05D003534 9.9e-09 64.3 55 63.6
TAR374G1148 Trochodendron aralioides HOM05D003202 ORTHO05D003534 9.9e-09 64.3 90 46.7
Aqoxy3G03326 Aquilegia oxysepala HOM05D003202 ORTHO05D003534 1.3e-08 63.9 53 60.4
MBI05_g00392_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 1.3e-08 63.9 55 61.8
CSS0022785 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 2.2e-08 63.2 53 58.5
GSVIVG01020038001 Vitis vinifera HOM05D003202 ORTHO05D003534 3.8e-08 62.4 53 60.4
CiPaw.06G082400 Carya illinoinensis HOM05D003202 ORTHO05D003534 4.9e-08 62.0 54 57.4
CANSAT64G1870 Cannabis sativa HOM05D003202 ORTHO05D003534 6.4e-08 61.6 53 62.3
Actinidia04029 Actinidia chinensis HOM05D003202 ORTHO05D003534 8.4e-08 61.2 54 55.6
Nitab4.5_0003062g0070 Nicotiana tabacum HOM05D003202 ORTHO05D003534 8.4e-08 61.2 78 48.7
Actinidia31195 Actinidia chinensis HOM05D003202 ORTHO05D003534 1.1e-07 60.8 85 44.7
Cc11_g13330 Coffea canephora HOM05D003202 ORTHO05D003534 1.1e-07 60.8 54 53.7
Nitab4.5_0007777g0020 Nicotiana tabacum HOM05D003202 ORTHO05D003534 1.1e-07 60.8 78 48.7
Rhsim12G0131400 Rhododendron simsii HOM05D003202 ORTHO05D003534 1.1e-07 60.8 54 57.4
RhsimUnG0242100 Rhododendron simsii HOM05D003202 ORTHO05D003534 1.1e-07 60.8 54 57.4
Cpa.g.sc183.27 Carica papaya HOM05D003202 ORTHO05D003534 1.4e-07 60.5 53 56.6
Atru.chr11.1835 Acer truncatum HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 56.6
CAN.G512.9 Capsicum annuum HOM05D003202 ORTHO05D003534 1.9e-07 60.1 78 47.4
Gohir.A13G072500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 56.6
Gohir.D13G072600 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 56.6
Gorai.013G083300 Gossypium raimondii HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 56.6
Sabra08G0113000 Salix brachista HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 54.7
TWI75G0627 Tripterygium wilfordii HOM05D003202 ORTHO05D003534 1.9e-07 60.1 53 56.6
Dinv34175 Davidia involucrata HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 58.5
FvH4_4g31660 Fragaria vesca HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 60.4
FAN07G0867 Fragaria x ananassa HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 60.4
FAN12G1936 Fragaria x ananassa HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 60.4
FAN17G2873 Fragaria x ananassa HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 60.4
FAN22G0720 Fragaria x ananassa HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 60.4
Hma1.2p1_0598F.1_g186820 Hydrangea macrophylla HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 56.6
Potri.008G148400 Populus trichocarpa HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 54.7
RcHm_v2.0_Chr4g0440161 Rosa chinensis HOM05D003202 ORTHO05D003534 2.4e-07 59.7 53 58.5
Aa31LG2G7450 Aethionema arabicum HOM05D003202 ORTHO05D003534 3.2e-07 59.3 53 56.6
Cfa009008 Carpinus fangiana HOM05D003202 ORTHO05D003534 3.2e-07 59.3 80 43.8
Dinv24972 Davidia involucrata HOM05D003202 ORTHO05D003534 3.2e-07 59.3 53 56.6
Peaxi162Scf00503g00613 Petunia axillaris HOM05D003202 ORTHO05D003534 3.2e-07 59.3 53 58.5
Prupe.1G271100 Prunus persica HOM05D003202 ORTHO05D003534 3.2e-07 59.3 53 58.5
PSO591G0240 Papaver somniferum HOM05D003202 ORTHO05D003534 4.2e-07 58.9 52 57.7
PSO832G0571 Papaver somniferum HOM05D003202 ORTHO05D003534 4.2e-07 58.9 52 57.7
QL03p064932 Quercus lobata HOM05D003202 ORTHO05D003534 4.2e-07 58.9 53 56.6
COL.COLO4_22970 Corchorus olitorius HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 54.7
Duzib248G0847 Durio zibethinus HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 52.8
Lj3A1041G81 Lonicera japonica HOM05D003202 ORTHO05D003534 5.4e-07 58.5 54 55.6
PGR119G0965 Punica granatum HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 60.4
Sabra10G0065500 Salix brachista HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 54.7
Sp1g12720 Schrenkiella parvula HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 56.6
Sp2g13920 Schrenkiella parvula HOM05D003202 ORTHO05D003534 5.4e-07 58.5 53 56.6
BcaB07g30321 Brassica carinata HOM05D003202 ORTHO05D003534 7.1e-07 58.2 52 55.8
A06p10350 Brassica napus HOM05D003202 ORTHO05D003534 7.1e-07 58.2 53 56.6
CSS0015674 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 7.1e-07 58.2 53 54.7
Duzib251G0052 Durio zibethinus HOM05D003202 ORTHO05D003534 7.1e-07 58.2 53 54.7
MD13G1075000 Malus domestica HOM05D003202 ORTHO05D003534 7.1e-07 58.2 54 55.6
Thecc.02G352100 Theobroma cacao HOM05D003202 ORTHO05D003534 7.1e-07 58.2 53 54.7
AL5G12030 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 9.3e-07 57.8 53 52.8
AT2G02820 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 9.3e-07 57.8 53 52.8
CARHR145260 Cardamine hirsuta HOM05D003202 ORTHO05D003534 9.3e-07 57.8 53 54.7
Haze_12037 Corylus avellana HOM05D003202 ORTHO05D003534 9.3e-07 57.8 55 54.5
DCAR_027399 Daucus carota HOM05D003202 ORTHO05D003534 9.3e-07 57.8 54 50.0
DCAR_031036 Daucus carota HOM05D003202 ORTHO05D003534 9.3e-07 57.8 54 51.9
arahy.Tifrunner.gnm1.ann1.XU3QCQ Arachis hypogaea HOM05D003202 ORTHO05D003534 1.2e-06 57.4 49 57.1
BcaB02g06485 Brassica carinata HOM05D003202 ORTHO05D003534 1.2e-06 57.4 53 56.6
CiPaw.05G138200 Carya illinoinensis HOM05D003202 ORTHO05D003534 1.2e-06 57.4 54 53.7
THA.LOC104824084 Tarenaya hassleriana HOM05D003202 ORTHO05D003534 1.2e-06 57.4 53 52.8
BcaC05g25334 Brassica carinata HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 54.7
C05p12150 Brassica napus HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 54.7
BolC5t29968H Brassica oleracea HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 54.7
BraA06t24217Z Brassica rapa HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 54.7
Thhalv10004109m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 54.7
Gohir.A03G098800 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.6e-06 57.0 53 52.8
Solyc05g007160.3 Solanum lycopersicum HOM05D003202 ORTHO05D003534 1.6e-06 57.0 78 46.2
Sopen05g003120 Solanum pennellii HOM05D003202 ORTHO05D003534 1.6e-06 57.0 78 46.2
PGSC0003DMG400025612 Solanum tuberosum HOM05D003202 ORTHO05D003534 1.6e-06 57.0 78 46.2
AL1G26240 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 2.1e-06 56.6 53 52.8
Carub.0005s0173 Capsella rubella HOM05D003202 ORTHO05D003534 2.1e-06 56.6 53 50.9
TAR629G1941 Trochodendron aralioides HOM05D003202 ORTHO05D003534 2.1e-06 56.6 52 59.6
Ah.03g135320 Amaranthus hybridus HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 54.7
AT1G14350 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 52.8
BcaC03g17170 Brassica carinata HOM05D003202 ORTHO05D003534 2.7e-06 56.2 52 55.8
A02p33130 Brassica napus HOM05D003202 ORTHO05D003534 2.7e-06 56.2 52 55.8
A06p43460 Brassica napus HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 50.9
BraA02t08336Z Brassica rapa HOM05D003202 ORTHO05D003534 2.7e-06 56.2 52 55.8
BraA06t27231Z Brassica rapa HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 50.9
AUR62005744 Chenopodium quinoa HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 52.8
Duzib268G1601 Durio zibethinus HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 54.7
Thhalv10007659m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 2.7e-06 56.2 53 52.8
EL10Ac6g13174 Beta vulgaris HOM05D003202 ORTHO05D003534 3.5e-06 55.8 53 50.9
CARHR014790 Cardamine hirsuta HOM05D003202 ORTHO05D003534 3.5e-06 55.8 53 52.8
AUR62028814 Chenopodium quinoa HOM05D003202 ORTHO05D003534 3.5e-06 55.8 53 52.8
MD16G1076100 Malus domestica HOM05D003202 ORTHO05D003534 3.5e-06 55.8 54 53.7
Hund25259 Selenicereus undatus HOM05D003202 ORTHO05D003534 3.5e-06 55.8 53 52.8
vmacro16338 Vaccinium macrocarpon HOM05D003202 ORTHO05D003534 3.5e-06 55.8 54 51.9
Gohir.D02G114500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 4.6e-06 55.5 53 50.9
Gorai.005G139500 Gossypium raimondii HOM05D003202 ORTHO05D003534 4.6e-06 55.5 53 50.9
Sc14g0008310 Simmondsia chinensis HOM05D003202 ORTHO05D003534 4.6e-06 55.5 53 54.7
arahy.Tifrunner.gnm1.ann1.FBF79B Arachis hypogaea HOM05D003202 ORTHO05D003534 7.8e-06 54.7 49 55.1
arahy.Tifrunner.gnm1.ann1.WMRY2G Arachis hypogaea HOM05D003202 ORTHO05D003534 7.8e-06 54.7 52 53.8
MSTRG.2355 Avicennia marina HOM05D003202 ORTHO05D003534 7.8e-06 54.7 54 53.7
Carub.0001s1405 Capsella rubella HOM05D003202 ORTHO05D003534 7.8e-06 54.7 53 50.9


User provided reference genes

Program Settings