Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 0.0e+00 1094.3 545 100.0
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.5e-236 821.6 678 67.1
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 1.5e-170 603.6 703 50.1
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 2.6e-170 602.8 711 50.2
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 5.4e-168 595.1 706 49.4
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 1.2e-167 594.0 708 48.7
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 3.5e-167 592.4 712 50.0
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 3.5e-167 592.4 711 49.2
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 7.7e-167 591.3 711 48.8
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.0e-166 590.9 712 49.7
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.3e-166 589.7 712 49.7
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.9e-166 589.3 712 49.7
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.3e-165 585.9 639 58.1
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 3.3e-165 585.9 712 49.7
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 4.2e-165 585.5 711 48.7
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 1.0e-163 580.9 710 48.2
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 2.3e-163 579.7 711 48.9
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 5.2e-163 578.6 711 48.7
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 2.6e-162 576.2 712 48.0
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 3.4e-162 575.9 717 48.7
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 4.4e-162 575.5 711 48.0
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 5.7e-162 575.1 705 47.5
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 5.7e-162 575.1 713 48.8
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 9.8e-162 574.3 707 48.2
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 1.3e-161 573.9 706 48.0
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.2e-161 573.2 717 47.1
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 2.2e-161 573.2 710 47.9
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 6.3e-161 571.6 706 48.0
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 6.3e-161 571.6 713 47.8
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 8.3e-161 571.2 711 48.4
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 2.4e-160 569.7 711 47.5
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 4.1e-160 568.9 712 46.5
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 4.1e-160 568.9 723 47.0
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 7.0e-160 568.2 711 48.2
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 5.9e-159 565.1 732 47.1
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 7.8e-159 564.7 710 47.7
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 1.7e-158 563.5 717 47.7
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.3e-158 563.1 711 48.0
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 5.6e-157 558.5 710 46.3
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 7.3e-157 558.1 706 47.9
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 2.8e-156 556.2 694 46.8
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 2.3e-155 553.1 706 46.5
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.5e-154 550.4 734 46.3
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 2.0e-154 550.1 710 46.3
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 3.4e-154 549.3 710 46.1
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 5.8e-154 548.5 707 45.8
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 5.8e-154 548.5 709 46.1
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 7.5e-154 548.1 704 46.2
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 9.8e-154 547.7 708 46.3
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 9.8e-154 547.7 708 45.5
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.3e-153 547.4 708 47.6
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 1.7e-153 547.0 706 46.3
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 2.9e-153 546.2 710 46.1
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 4.9e-153 545.4 710 45.6
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 6.4e-153 545.0 710 47.0
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.1e-152 544.3 688 48.0
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 3.2e-152 542.7 702 46.7
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 5.4e-152 542.0 706 45.5
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 2.7e-151 539.7 682 47.9
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 3.9e-150 535.8 709 45.0
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 8.6e-150 534.6 713 46.6
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 8.6e-150 534.6 720 45.0
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.1e-149 534.3 707 44.8
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 1.2e-148 530.8 709 45.8
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 4.7e-148 528.9 708 46.2
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 1.4e-147 527.3 709 44.3
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 1.4e-147 527.3 712 46.1
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 1.8e-147 526.9 703 44.7
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 1.8e-147 526.9 756 43.5
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 5.2e-147 525.4 707 45.0
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 1.5e-146 523.9 664 47.6
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 1.7e-145 520.4 702 45.4
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 2.2e-145 520.0 709 44.7
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.1e-144 517.7 703 44.8
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 3.2e-144 516.2 708 45.3
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 7.0e-144 515.0 706 45.2
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 9.2e-144 514.6 708 44.5
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 6.0e-143 511.9 725 44.3
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 1.3e-142 510.8 706 45.0
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 5.0e-142 508.8 706 44.9
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 5.0e-142 508.8 767 41.1
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 6.6e-142 508.4 710 43.8
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 1.9e-141 506.9 708 45.2
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 1.9e-141 506.9 710 43.1
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 2.5e-141 506.5 671 47.8
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 9.5e-141 504.6 709 43.9
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 1.2e-140 504.2 733 44.1
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 1.6e-140 503.8 717 43.9
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.6e-140 503.8 707 43.6
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 1.1e-139 501.1 677 45.6
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 6.8e-139 498.4 706 43.2
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 6.8e-139 498.4 706 43.2
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 6.8e-139 498.4 716 45.1
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 1.5e-138 497.3 687 44.5
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 1.5e-138 497.3 717 43.5
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 2.0e-138 496.9 707 44.4
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 3.4e-138 496.1 703 43.2
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 2.2e-137 493.4 707 43.1
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 8.3e-137 491.5 707 43.1
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 1.4e-136 490.7 725 44.3
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 7.1e-136 488.4 686 44.3
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 2.3e-134 483.4 710 42.4
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 3.9e-134 482.6 737 42.9
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 1.6e-132 477.2 719 42.6
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 1.8e-131 473.8 624 47.1
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 4.0e-131 472.6 624 47.6
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 1.5e-130 470.7 711 41.8
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 1.5e-130 470.7 686 42.9
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 7.1e-128 461.8 711 41.5
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 1.6e-127 460.7 641 45.7
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 2.1e-127 460.3 732 41.1
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 8.7e-126 454.9 709 41.0
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 1.5e-117 427.6 716 40.1
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 5.3e-115 419.1 703 40.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 6.9e-115 418.7 763 38.5
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 2.6e-114 416.8 648 42.0
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 5.1e-110 402.5 623 42.2
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 4.0e-107 392.9 675 40.4
CANSAT56G1871 Cannabis sativa HOM05D004428 ORTHO05D006381 1.6e-103 380.9 394 53.6
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 9.3e-96 355.1 397 51.6
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 7.4e-93 345.5 622 39.7
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 9.7e-93 345.1 650 38.8
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 3.4e-90 336.7 713 34.8
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 1.1e-88 331.6 712 33.1
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 2.5e-88 330.5 692 34.2
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 8.2e-84 315.5 871 31.5
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 7.7e-82 308.9 674 32.5
PSO063G3671 Papaver somniferum HOM05D004428 ORTHO05D006381 8.2e-68 262.3 375 44.0
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 2.6e-66 257.3 758 28.4
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 3.8e-57 226.9 176 65.9
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 9.4e-56 222.2 190 57.9
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 1.2e-53 215.3 241 52.7
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 5.7e-53 213.0 190 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 1.6e-50 204.9 649 28.7
BcaB04g17057 Brassica carinata HOM05D004428 ORTHO05D006381 8.3e-44 182.6 248 44.8
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 7.8e-42 176.0 573 27.6
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 7.3e-40 169.5 764 24.9
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 1.2e-37 162.2 780 24.5
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 1.1e-27 129.0 197 42.1
Oeu007483.1 Olea europaea HOM05D004428 ORTHO05D006381 1.4e-27 128.6 59 88.1
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 2.4e-27 127.9 114 58.8
Zm00001eb107630 Zea mays HOM05D004428 ORTHO05D035991 5.4e-27 126.7 107 61.7
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 3.9e-25 120.6 376 30.6
Dinv39586 Davidia involucrata HOM05D004428 ORTHO05D006381 1.5e-21 108.6 114 52.6
Cfa025316 Carpinus fangiana HOM05D004428 ORTHO05D006381 3.9e-17 94.0 697 21.2
Zm00001eb287390 Zea mays HOM05D004428 ORTHO05D035991 1.5e-13 82.0 78 56.4
Sp5g18200 Schrenkiella parvula HOM05D007948 ORTHO05D006374 7.3e-08 63.2 81 48.1
DCAR_022543 Daucus carota HOM05D000819 ORTHO05D000661 9.6e-08 62.8 44 59.1
Aa31LG5G19870 Aethionema arabicum HOM05D004428 ORTHO05D017237 2.8e-07 61.2 51 60.8
Haze_22768 Corylus avellana HOM05D000148 ORTHO05D000081 6.2e-07 60.1 35 74.3
COL.COLO4_27852 Corchorus olitorius HOM05D000093 ORTHO05D002784 8.1e-07 59.7 113 38.1
PSO017G6673 Papaver somniferum HOM05D002230 ORTHO05D002441 1.1e-06 59.3 569 20.4
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 2.4e-06 58.2 248 25.4


User provided reference genes

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