Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1961.0 1099 100.0
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1412.1 935 88.3
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1130.9 1158 58.8
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 1127.1 1140 59.8
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1097.4 1151 56.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1091.6 1142 58.3
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1086.6 1139 56.8
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1086.2 1157 57.2
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 1085.9 1154 58.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 1077.4 1114 57.5
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1075.8 1131 56.8
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 1.1e-310 1070.1 1147 56.8
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 1.5e-310 1069.7 1187 56.6
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 2.6e-310 1068.9 1135 57.6
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 3.3e-310 1068.5 1144 56.0
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 3.7e-309 1065.1 1136 59.0
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.4e-308 1063.1 1160 56.6
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 4.5e-307 1058.1 1158 55.4
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 5.0e-306 1054.7 1133 58.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 6.5e-306 1054.3 1148 56.6
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.1e-305 1053.5 1150 56.1
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 1.4e-305 1053.1 1146 54.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 2.5e-305 1052.4 1150 56.8
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 4.2e-305 1051.6 1149 55.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 5.5e-305 1051.2 1157 55.3
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 6.1e-304 1047.7 1151 55.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 8.0e-304 1047.3 1183 54.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 6.7e-303 1044.3 1130 55.3
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 2.6e-302 1042.3 1163 56.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 4.4e-302 1041.6 1133 54.2
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 4.4e-302 1041.6 1117 59.2
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 2.8e-301 1038.9 1139 54.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 4.8e-301 1038.1 1149 56.0
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 5.3e-300 1034.6 1139 56.4
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 7.0e-300 1034.2 1141 56.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 1.6e-299 1033.1 1126 55.5
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 2.0e-299 1032.7 1096 56.6
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.3e-298 1030.0 1166 53.4
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 3.8e-298 1028.5 1132 53.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.5e-297 1025.8 1145 55.4
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.5e-297 1025.8 1145 55.4
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 4.2e-297 1025.0 1143 55.8
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 4.2e-297 1025.0 1146 55.4
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 2.7e-296 1022.3 1157 55.4
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 3.6e-296 1021.9 1139 55.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 3.6e-296 1021.9 1123 57.2
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-294 1016.1 1113 60.9
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 4.4e-294 1015.0 1122 55.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 5.7e-294 1014.6 1135 55.2
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.8e-293 1011.5 1136 54.6
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 6.3e-293 1011.1 1136 54.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 6.3e-293 1011.1 1133 52.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 3.1e-292 1008.8 1148 53.9
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 2.7e-291 1005.7 1116 54.7
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.7e-291 1004.2 1136 53.2
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 1.0e-290 1003.8 1129 55.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 8.5e-290 1000.7 1156 55.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.5e-289 998.0 950 61.4
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 1.2e-288 996.9 1109 57.4
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 4.7e-288 995.0 1119 56.8
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 3.0e-287 992.3 1136 54.5
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 8.3e-285 984.2 1187 53.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.1e-284 983.8 1098 56.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 9.1e-284 980.7 1133 52.6
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.2e-283 980.3 1131 54.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 5.9e-283 978.0 1137 55.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 3.8e-282 975.3 1125 53.6
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 6.6e-282 974.5 1134 54.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 4.2e-281 971.8 1133 54.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 1.6e-280 969.9 1129 53.7
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 8.0e-280 967.6 1108 53.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 1.8e-279 966.5 1111 54.6
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 1.2e-278 963.8 1112 55.8
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 2.6e-278 962.6 1111 51.8
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 2.8e-277 959.1 1132 51.9
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 1.4e-276 956.8 1107 54.4
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 7.0e-276 954.5 1107 55.6
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 5.0e-274 948.3 1134 56.0
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 4.3e-273 945.3 1107 55.1
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 6.8e-271 937.9 1116 53.7
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 2.6e-270 936.0 1130 52.9
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.7e-269 933.3 1145 54.3
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 9.2e-268 927.5 1119 53.9
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 1.1e-265 920.6 1120 54.5
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 1.1e-265 920.6 1149 54.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 1.9e-265 919.8 1122 52.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 1.6e-264 916.8 1101 56.9
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 6.8e-263 911.4 1121 52.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 2.6e-262 909.4 1121 57.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 3.4e-262 909.1 1144 54.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.2e-261 906.4 1139 54.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.1e-260 904.0 1142 54.4
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 1.9e-257 893.3 1120 52.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.0e-254 883.2 1144 53.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 7.5e-254 881.3 1102 54.8
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 1.9e-249 866.7 1080 50.5
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 1.2e-246 857.4 1083 49.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 5.6e-233 812.0 640 66.4
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.0e-230 803.5 610 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 7.6e-230 801.6 1226 45.8
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 4.9e-221 772.3 1239 43.7
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 1.4e-220 770.8 1107 46.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 8.7e-210 734.9 986 48.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 3.0e-202 709.9 611 64.0
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 3.1e-199 699.9 1095 42.7
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.9e-181 640.2 856 52.9
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 4.2e-172 609.8 1126 44.0
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 2.3e-170 604.0 474 66.0
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.7e-160 571.2 497 56.5
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 6.7e-93 346.7 462 40.7
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 5.5e-87 327.0 298 60.7
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 6.5e-72 276.9 187 74.3
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 5.9e-65 253.8 480 35.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.9e-57 227.3 561 35.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-44 186.0 100 95.0
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-40 172.2 521 36.5
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.9e-39 169.1 542 27.9
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.8e-38 165.2 92 90.2
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.7e-35 154.8 89 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 8.3e-35 153.7 96 76.0
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.6e-30 139.4 191 49.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.3e-23 115.2 117 56.4
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.4e-19 100.9 124 46.8
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.2e-18 98.6 281 27.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.4e-12 78.6 57 66.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 9.9e-12 77.0 86 48.8
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.9e-11 75.5 36 88.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.9e-11 75.5 56 62.5
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.1e-07 63.5 75 49.3
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.3e-07 61.6 79 48.1
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 5.6e-07 61.2 74 44.6


User provided reference genes

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