Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 0.0e+00 1367.8 714 100.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1085.1 779 72.9
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1079.3 741 74.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1077.0 778 71.7
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.4e-304 1049.3 780 69.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.2e-304 1047.3 752 71.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.0e-303 1045.4 733 73.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 6.3e-302 1040.4 752 71.7
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 8.2e-302 1040.0 724 73.8
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.4e-301 1039.3 743 71.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.6e-300 1035.8 784 68.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.5e-300 1034.6 713 73.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 5.9e-300 1033.9 768 69.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.7e-300 1033.5 790 69.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.7e-299 1032.3 763 69.3
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 5.0e-299 1030.8 773 70.0
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 5.0e-299 1030.8 740 71.4
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 6.5e-299 1030.4 737 72.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.5e-298 1028.5 787 68.6
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 3.2e-298 1028.1 730 72.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 5.5e-298 1027.3 766 68.9
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 5.5e-298 1027.3 724 72.7
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 1.2e-297 1026.2 782 68.9
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.1e-297 1025.4 782 68.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 6.1e-297 1023.8 724 72.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 8.0e-297 1023.5 781 68.9
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.0e-296 1023.1 770 70.0
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 1.4e-296 1022.7 788 70.4
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 4.0e-296 1021.1 775 68.9
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 5.2e-296 1020.8 737 70.3
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.4e-295 1018.1 720 72.1
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 5.7e-295 1017.3 731 73.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.7e-295 1017.3 718 72.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.7e-294 1015.8 775 68.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 3.7e-294 1014.6 742 70.4
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.8e-293 1012.3 732 70.4
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 4.1e-293 1011.1 749 69.4
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 7.0e-293 1010.4 751 68.7
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.1e-293 1010.0 742 70.6
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.6e-292 1009.2 723 71.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.6e-292 1009.2 774 69.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 7.7e-292 1006.9 721 71.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 7.7e-292 1006.9 712 72.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 3.3e-290 1001.5 774 69.0
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 4.2e-290 1001.1 755 68.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.2e-290 1001.1 777 67.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.7e-286 989.2 709 71.5
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 9.2e-285 983.4 705 71.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 2.0e-284 982.2 699 71.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.0e-284 982.2 782 66.0
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 4.5e-284 981.1 702 71.5
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 4.5e-284 981.1 702 71.5
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.7e-283 979.2 707 70.9
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.6e-281 972.6 765 67.1
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.6e-281 971.5 696 70.7
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 6.1e-281 970.7 710 70.0
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.4e-280 969.5 796 66.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 6.8e-280 967.2 712 69.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.2e-279 966.5 760 67.4
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.2e-279 966.5 754 66.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.2e-279 966.5 728 68.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.5e-279 966.1 552 85.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.9e-277 959.1 785 67.5
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 7.0e-277 957.2 765 65.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 3.0e-275 951.8 786 64.4
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 3.0e-275 951.8 776 62.9
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 6.6e-275 950.7 785 64.5
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.6e-275 950.3 785 64.3
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 2.5e-274 948.7 718 68.9
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.1e-273 945.7 786 63.9
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 4.7e-273 944.5 794 63.4
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.4e-272 943.0 745 65.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 6.8e-272 940.6 786 63.6
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 6.8e-272 940.6 725 67.0
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 8.9e-272 940.3 763 64.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.5e-271 939.5 716 67.3
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.3e-270 936.4 785 63.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.3e-270 936.4 728 65.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.2e-270 935.6 785 63.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 2.9e-270 935.3 781 64.3
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 6.4e-270 934.1 703 68.4
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.4e-270 934.1 712 68.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 9.2e-269 930.2 679 70.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 3.9e-267 924.9 774 63.8
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.1e-267 924.5 774 63.8
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 8.6e-267 923.7 775 64.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.5e-266 922.9 775 63.9
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.8e-265 918.7 728 66.8
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 4.4e-263 911.4 668 70.4
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.3e-262 909.8 773 61.7
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.7e-262 909.4 739 64.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 6.4e-262 907.5 841 59.7
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.3e-258 895.2 673 68.5
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 8.1e-257 890.6 726 65.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.4e-256 889.0 669 67.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.9e-254 881.3 723 64.2
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.7e-236 822.4 625 67.2
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.3e-235 819.3 625 66.6
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 6.4e-230 801.2 706 57.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 5.1e-227 791.6 735 56.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.5e-222 774.6 541 67.5
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 8.4e-222 774.2 717 55.9
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 4.2e-213 745.3 554 66.6
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.7e-212 742.7 529 67.7
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.3e-209 733.8 584 67.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 9.1e-208 727.6 531 65.5
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.1e-208 727.6 709 55.7
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.3e-194 682.6 518 64.7
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.2e-182 643.3 414 75.8
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.5e-173 613.2 402 75.9
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-163 580.1 414 66.7
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 4.6e-143 512.7 343 74.6
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-131 474.9 269 84.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 4.2e-104 383.3 708 36.2
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 6.1e-103 379.4 490 44.3
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.9e-98 362.8 276 63.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 4.5e-90 336.7 295 60.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.6e-82 310.8 590 39.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 5.2e-70 270.0 583 32.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.2e-68 264.6 350 47.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-58 232.3 268 53.0
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.7e-44 185.3 99 86.9
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 5.2e-38 163.7 83 89.2
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.0e-33 147.9 118 61.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.9e-32 145.2 148 52.7
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.3e-20 105.9 54 87.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-17 94.4 156 37.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.5e-16 92.4 103 47.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 7.3e-16 90.1 87 57.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.2e-11 74.7 75 53.3
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.3e-09 68.6 41 80.5
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.3e-08 64.7 80 46.2


User provided reference genes

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