Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.5e-105 383.6 188 100.0
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.9e-103 377.1 188 97.9
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.9e-99 364.0 180 98.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 86.7
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 84.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 84.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.5
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 80.9
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 82.4
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.4
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.9
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.9
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.9
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 80.9
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 80.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.3
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.5e-85 319.7 186 80.1
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 79.8
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 4.4e-85 318.2 186 80.1
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 79.8
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 5.7e-85 317.8 186 80.1
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 186 78.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.3e-84 316.6 186 78.0
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.3e-84 316.6 187 78.6
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 78.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 78.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 78.2
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.3
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 3.7e-84 315.1 183 80.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 78.2
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.2
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.2
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 78.7
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 79.3
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 186 77.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 77.1
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 76.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 78.2
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 77.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 76.6
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.7
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 78.4
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 78.4
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 78.7
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 77.1
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 77.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 76.6
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 76.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 76.1
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 78.2
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 77.1
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 4.5e-82 308.1 179 80.4
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 76.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 77.1
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.3e-81 306.6 188 76.6
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.1
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 75.5
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 76.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 76.6
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 76.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 76.1
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 75.5
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 77.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 75.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 75.0
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 73.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 75.5
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.6e-79 298.5 188 76.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 75.1
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 4.4e-77 291.6 188 73.9
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 7.5e-77 290.8 189 74.1
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.8e-76 288.9 188 74.5
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.8e-76 288.9 188 74.5
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 4.8e-76 288.1 189 74.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 4.8e-76 288.1 188 72.9
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.2e-76 287.3 189 74.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 74.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-75 286.6 188 74.5
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.1e-75 285.4 188 71.8
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.0e-75 284.3 174 77.6
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 7.0e-75 284.3 189 74.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.1e-75 283.9 188 71.3
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.0e-74 282.7 188 72.9
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.5e-74 282.0 188 70.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 3.5e-74 282.0 188 70.2
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.0e-73 280.4 188 70.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 2.2e-73 279.3 190 70.5
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.9e-73 278.9 169 75.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 2.9e-73 278.9 188 69.1
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.5e-72 276.6 190 70.0
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 5.5e-72 274.6 189 66.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 69.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 8.0e-71 270.8 187 67.4
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.4e-70 270.0 188 70.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.2e-69 266.9 187 66.3
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 9.8e-69 263.8 187 67.9
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.7e-68 263.1 188 69.7
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 8.3e-68 260.8 179 69.3
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.8e-67 259.6 188 70.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 7.0e-67 257.7 179 68.2
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.1e-67 257.3 188 69.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 6.5e-65 251.1 177 69.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 8.0e-63 244.2 188 60.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.0e-62 241.9 177 65.0
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 7.5e-61 237.7 188 64.9
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 9.2e-59 230.7 181 63.0
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-57 227.3 165 69.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.5e-48 196.1 187 49.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 8.3e-44 181.0 127 69.3
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.0e-42 176.4 115 72.2
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 4.6e-42 175.3 109 76.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 5.0e-41 171.8 121 66.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.6e-39 165.6 123 67.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-36 157.1 188 48.4
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-36 156.8 173 52.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.9e-36 155.2 85 83.5
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 3.6e-31 139.0 78 80.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 8.1e-23 111.3 91 61.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 3.8e-20 102.4 64 73.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.8e-09 67.0 35 85.7
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.8e-06 57.0 39 61.5


User provided reference genes

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