Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.6e-263 912.1 447 100.0
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.8e-239 830.9 419 96.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.2e-213 746.5 408 88.2
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.3e-212 743.0 408 87.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.7e-212 742.7 407 87.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 6.5e-212 740.7 408 87.7
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 6.5e-212 740.7 407 86.5
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.9e-211 739.2 408 87.3
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.9e-211 739.2 408 87.3
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.2e-211 738.0 408 87.5
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 7.2e-211 737.3 409 86.3
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.2e-211 737.3 408 86.8
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 9.4e-211 736.9 406 86.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.4e-211 736.9 408 87.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 9.4e-211 736.9 408 87.3
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.1e-210 735.7 406 86.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-210 734.9 408 87.0
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 7.9e-210 733.8 408 86.3
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.8e-209 732.6 408 85.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.8e-209 732.6 406 85.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.3e-209 732.3 406 85.7
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 3.0e-209 731.9 406 86.5
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.0e-209 731.9 408 86.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.0e-209 731.9 406 85.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.9e-209 731.5 406 86.0
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.1e-209 731.1 406 85.5
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 8.8e-209 730.3 408 85.3
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.1e-208 729.9 406 85.7
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.1e-208 729.9 408 85.8
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-208 729.9 406 85.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-208 729.6 406 84.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.5e-208 729.6 406 84.7
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.5e-208 729.6 408 85.8
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.9e-208 729.2 406 85.7
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.5e-208 728.8 406 85.5
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.5e-208 728.8 416 85.3
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.3e-208 728.0 406 85.2
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 4.3e-208 728.0 408 85.8
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.7e-208 727.6 409 86.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.7e-208 727.6 408 85.3
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.7e-208 727.6 408 85.5
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 7.4e-208 727.2 408 85.0
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 9.7e-208 726.9 408 85.0
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 9.7e-208 726.9 408 85.3
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.3e-207 726.5 406 85.7
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.3e-207 726.5 408 85.5
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.7e-207 726.1 407 84.5
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.2e-207 725.7 409 85.6
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 3.7e-207 724.9 406 85.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 4.8e-207 724.5 409 84.8
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.3e-207 724.2 406 85.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.2e-207 723.8 405 85.7
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.2e-207 723.8 406 85.2
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.4e-206 723.0 406 85.2
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.4e-206 723.0 408 84.1
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.4e-206 723.0 406 85.0
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.8e-206 722.6 412 85.0
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.8e-206 722.6 406 85.5
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.4e-206 722.2 404 84.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.4e-206 722.2 408 84.1
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.4e-206 722.2 406 85.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 3.1e-206 721.8 407 85.5
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.1e-206 721.8 406 84.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 9.1e-206 720.3 406 84.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.2e-205 719.9 406 85.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.4e-205 718.4 450 78.0
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 3.4e-205 718.4 408 83.8
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.5e-205 718.0 406 84.5
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.0e-204 716.8 406 84.7
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.0e-204 716.8 408 84.3
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.0e-204 716.8 406 85.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.2e-204 715.7 406 85.2
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.9e-204 715.3 406 84.2
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.9e-204 715.3 406 84.5
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.9e-204 715.3 415 83.6
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 3.8e-204 714.9 406 83.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.8e-204 714.9 406 84.5
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 6.5e-204 714.1 406 82.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 6.5e-204 714.1 406 82.8
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 6.5e-204 714.1 406 82.5
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-203 713.4 399 85.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.1e-203 713.4 412 84.0
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.1e-203 713.4 408 82.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.9e-203 712.6 406 84.5
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.9e-203 712.6 406 83.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 3.2e-203 711.8 409 83.6
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.2e-203 711.8 408 84.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 4.2e-203 711.4 412 83.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.5e-203 711.1 406 83.5
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.5e-203 711.1 406 83.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-202 709.5 410 83.7
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-202 709.5 410 83.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.7e-202 708.0 408 82.1
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 6.1e-202 707.6 407 82.3
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 7.9e-202 707.2 411 83.7
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.0e-201 706.8 407 82.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.4e-201 706.4 407 83.8
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.8e-201 706.1 404 82.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.3e-201 705.7 406 82.3
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.3e-201 705.7 422 81.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.0e-201 705.3 406 82.0
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 3.9e-201 704.9 407 83.8
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.1e-201 704.5 433 79.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.6e-200 702.2 421 81.5
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 9.7e-200 700.3 417 82.7
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.2e-199 699.1 449 76.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.7e-199 698.4 407 81.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 8.2e-199 697.2 410 81.7
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-198 694.9 409 80.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 7.7e-197 690.6 407 80.1
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.2e-196 689.1 379 86.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.4e-195 686.4 385 85.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.4e-195 686.4 473 72.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.7e-194 682.2 387 83.5
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.0e-193 680.2 517 66.9
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-192 676.8 449 72.8
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.4e-192 674.9 382 84.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.8e-190 669.5 408 77.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 7.0e-190 667.5 379 82.8
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.0e-189 666.0 421 78.9
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.5e-189 664.8 379 82.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.3e-188 663.3 358 88.8
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 6.1e-186 654.4 356 86.8
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.7e-183 646.4 358 86.9
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 9.4e-179 630.6 408 75.7
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.1e-174 617.1 406 73.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.5e-171 605.9 405 70.4
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.2e-171 604.4 405 69.9
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.8e-170 602.4 410 69.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.5e-163 580.1 400 69.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.2e-162 577.0 317 87.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.5e-152 543.5 389 70.7
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.3e-151 537.7 410 67.3
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.3e-143 513.8 279 87.8
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 6.6e-140 501.5 400 62.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.1e-137 494.2 310 78.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 9.3e-126 454.5 368 60.9
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.7e-124 450.3 245 88.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.0e-121 439.1 255 82.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.2e-118 429.5 415 53.0
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.9e-111 406.4 241 82.2
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 5.5e-110 402.1 227 84.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 3.9e-100 369.4 251 72.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 6.9e-97 358.6 197 86.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.0e-79 299.3 424 41.3
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 8.2e-74 282.0 396 42.7
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 5.3e-73 279.3 183 73.8
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 6.8e-68 262.3 180 68.9
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 4.5e-56 223.0 141 73.0
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 7.7e-56 222.2 140 73.6
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 7.2e-54 215.7 124 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.2e-49 200.3 104 91.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.9e-20 102.4 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.6e-16 91.7 128 43.0
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 6.9e-12 76.3 333 24.0
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 5.8e-11 73.2 326 23.9


User provided reference genes

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