Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.8e-51 204.9 97 100.0
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 3.1e-42 174.9 92 88.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 4.4e-41 171.0 92 87.0
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 7.6e-41 170.2 92 84.8
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 2.9e-40 168.3 92 84.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 1.1e-39 166.4 95 82.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 2.4e-39 165.2 91 84.6
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.2e-39 164.9 95 82.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.2e-39 164.9 92 83.7
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 3.2e-39 164.9 95 82.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 3.2e-39 164.9 95 82.1
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 4.2e-39 164.5 90 85.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 5.4e-39 164.1 95 82.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 7.1e-39 163.7 92 84.8
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 9.3e-39 163.3 96 82.3
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 9.3e-39 163.3 92 84.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.6e-38 162.5 91 81.3
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 2.1e-38 162.2 92 84.8
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 2.7e-38 161.8 92 83.7
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.5e-38 161.4 92 82.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.6e-38 161.0 92 83.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 7.8e-38 160.2 92 82.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 1.3e-37 159.5 97 80.4
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.3e-37 159.5 91 82.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 2.3e-37 158.7 93 82.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 3.0e-37 158.3 93 81.7
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 3.0e-37 158.3 92 77.2
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 5.1e-37 157.5 96 77.1
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.6e-37 157.1 92 82.6
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 1.5e-36 156.0 92 80.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-36 155.6 86 83.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-36 155.6 86 83.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.9e-36 155.6 91 78.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 3.3e-36 154.8 86 83.7
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 3.3e-36 154.8 86 83.7
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 3.3e-36 154.8 91 80.2
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 4.3e-36 154.5 90 80.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 4.3e-36 154.5 89 80.9
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 4.3e-36 154.5 86 82.6
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 4.3e-36 154.5 86 83.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 5.6e-36 154.1 86 83.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.6e-36 154.1 91 78.0
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 5.6e-36 154.1 90 80.0
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 7.3e-36 153.7 98 76.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 9.6e-36 153.3 91 78.0
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 9.6e-36 153.3 92 81.5
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.3e-35 152.9 83 83.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 1.3e-35 152.9 90 76.7
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 1.6e-35 152.5 92 76.1
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.8e-35 151.8 93 79.6
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.8e-35 151.8 93 79.6
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 2.8e-35 151.8 90 77.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 3.6e-35 151.4 94 79.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 3.6e-35 151.4 94 80.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 4.8e-35 151.0 93 79.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 6.2e-35 150.6 91 79.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 6.2e-35 150.6 88 76.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 6.2e-35 150.6 91 76.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 6.2e-35 150.6 94 78.7
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 8.1e-35 150.2 94 80.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 8.1e-35 150.2 92 75.0
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 8.1e-35 150.2 92 71.7
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.1e-34 149.8 89 79.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.4e-34 149.4 86 80.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 1.4e-34 149.4 90 78.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.8e-34 149.1 89 77.5
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.8e-34 149.1 95 73.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 3.1e-34 148.3 91 75.8
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 4.0e-34 147.9 89 77.5
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 4.0e-34 147.9 89 76.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 4.0e-34 147.9 91 79.1
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 5.3e-34 147.5 92 76.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.3e-34 147.5 83 79.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 5.3e-34 147.5 94 74.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 6.9e-34 147.1 93 78.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 1.2e-33 146.4 93 75.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.2e-33 146.4 88 77.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 1.2e-33 146.4 91 75.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 1.5e-33 146.0 92 79.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 2.0e-33 145.6 92 72.8
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 2.0e-33 145.6 93 78.5
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.0e-33 145.6 88 77.3
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.6e-33 145.2 92 72.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 2.6e-33 145.2 88 76.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 3.4e-33 144.8 93 77.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 3.4e-33 144.8 94 71.3
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 4.5e-33 144.4 90 75.6
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 4.5e-33 144.4 88 75.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 4.5e-33 144.4 95 72.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.6e-33 143.7 94 70.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 1.3e-32 142.9 94 76.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 2.9e-32 141.7 93 74.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 2.9e-32 141.7 94 74.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.8e-32 141.4 93 74.2
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 3.8e-32 141.4 93 74.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 3.8e-32 141.4 93 74.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 3.8e-32 141.4 93 74.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 6.4e-32 140.6 93 75.3
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 6.4e-32 140.6 94 72.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 6.4e-32 140.6 92 70.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 8.4e-32 140.2 95 71.6
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 8.4e-32 140.2 92 71.7
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.1e-31 139.8 92 71.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 1.1e-31 139.8 87 74.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 1.4e-31 139.4 98 73.5
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 1.9e-31 139.0 92 73.9
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 1.9e-31 139.0 89 74.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 3.2e-31 138.3 94 71.3
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 5.4e-31 137.5 93 74.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 9.3e-31 136.7 93 73.1
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 1.6e-30 136.0 91 74.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.6e-30 136.0 91 74.7
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 1.6e-30 136.0 93 73.1
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 2.7e-30 135.2 93 73.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.7e-30 135.2 92 66.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.7e-30 135.2 84 76.2
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 3.5e-30 134.8 134 51.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 4.6e-30 134.4 93 73.1
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 3.9e-29 131.3 89 70.8
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 1.9e-28 129.0 83 68.7
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.3e-24 116.3 88 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.1e-23 113.2 81 61.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.4e-23 112.8 85 61.2
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 7.1e-23 110.5 79 64.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-21 106.3 84 60.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.2e-19 97.4 86 51.2
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.9e-15 85.9 49 79.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 5.5e-15 84.3 47 83.0
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 6.0e-14 80.9 98 44.9
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.0e-13 80.1 43 83.7
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-13 79.7 44 79.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 2.3e-13 79.0 43 81.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.9e-13 78.2 46 76.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.3e-11 73.2 44 70.5
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.1e-10 68.6 47 66.0
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.3e-10 67.8 42 69.0


User provided reference genes

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