Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1528 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 7.5e-242 840.1 430 100.0
CDE02G2039 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 4.2e-224 781.2 430 91.9
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 9.8e-16 89.0 219 31.5
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 5.1e-12 76.6 265 26.4
TAR625G0371 Trochodendron aralioides HOM05D000650 ORTHO05D000735 6.6e-12 76.3 101 41.6
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 1.5e-11 75.1 178 33.7
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.9e-11 74.7 194 31.4
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 7.3e-11 72.8 116 38.8
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 7.3e-11 72.8 231 30.3
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.2e-10 72.0 166 29.5
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.6e-10 71.6 252 28.2
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 2.1e-10 71.2 176 31.8
Potri.001G283000 Populus trichocarpa HOM05D000650 ORTHO05D007302 2.1e-10 71.2 208 26.4
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 2.8e-10 70.9 196 28.6
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 2.8e-10 70.9 183 32.8
Sabra09G0060100 Salix brachista HOM05D000650 ORTHO05D007302 3.6e-10 70.5 193 27.5
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 8.1e-10 69.3 177 31.6
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 1.1e-09 68.9 296 30.1
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.4e-09 68.6 161 28.6
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.4e-09 68.6 333 26.7
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 1.8e-09 68.2 189 28.6
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 1.8e-09 68.2 172 32.0
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 2.3e-09 67.8 205 29.3
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 3.1e-09 67.4 379 24.3
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 3.1e-09 67.4 195 30.8
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 3.1e-09 67.4 360 26.1
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 4.0e-09 67.0 186 30.6
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 4.0e-09 67.0 223 26.0
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 5.2e-09 66.6 395 25.1
Gohir.A03G178000 Gossypium hirsutum HOM05D000650 ORTHO05D007302 5.2e-09 66.6 199 27.1
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 5.2e-09 66.6 191 27.7
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 6.8e-09 66.2 357 26.9
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 6.8e-09 66.2 182 27.5
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 6.8e-09 66.2 371 28.3
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 6.8e-09 66.2 148 33.1
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 8.9e-09 65.9 225 28.9
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 8.9e-09 65.9 347 26.2
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 8.9e-09 65.9 341 26.4
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 8.9e-09 65.9 178 28.1
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 1.2e-08 65.5 196 31.1
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.2e-08 65.5 196 30.1
Potri.009G078500 Populus trichocarpa HOM05D000650 ORTHO05D007302 1.2e-08 65.5 198 27.3
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.2e-08 65.5 359 28.7
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.5e-08 65.1 215 27.4
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.5e-08 65.1 322 25.5
Os09g0421600 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 1.5e-08 65.1 168 26.2
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 1.5e-08 65.1 114 36.0
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 2.0e-08 64.7 169 29.6
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 2.0e-08 64.7 187 30.5
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.0e-08 64.7 406 27.1
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 2.6e-08 64.3 361 25.8
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 2.6e-08 64.3 193 29.5
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 2.6e-08 64.3 198 29.8
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 3.4e-08 63.9 236 26.3
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 3.4e-08 63.9 135 31.9
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 3.4e-08 63.9 234 29.5
Haze_10697 Corylus avellana HOM05D000650 ORTHO05D007302 4.4e-08 63.5 103 37.9
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 4.4e-08 63.5 275 27.3
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 4.4e-08 63.5 225 32.0
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 5.8e-08 63.2 172 30.2
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 5.8e-08 63.2 195 27.2
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 5.8e-08 63.2 328 26.5
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 7.6e-08 62.8 105 36.2
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 7.6e-08 62.8 177 28.2
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 9.9e-08 62.4 94 36.2
Gorai.005G226700 Gossypium raimondii HOM05D000650 ORTHO05D007302 9.9e-08 62.4 180 27.8
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 9.9e-08 62.4 181 28.2
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 9.9e-08 62.4 223 29.6
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 1.3e-07 62.0 186 30.1
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 1.3e-07 62.0 173 29.5
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.3e-07 62.0 166 32.5
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.3e-07 62.0 164 31.1
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 1.3e-07 62.0 102 37.3
Hund02984 Selenicereus undatus HOM05D016866 ORTHO05D015160 1.3e-07 62.0 331 27.2
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.7e-07 61.6 427 25.3
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 1.7e-07 61.6 202 27.7
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.7e-07 61.6 173 29.5
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 2.2e-07 61.2 170 29.4
Nitab4.5_0004586g0040 Nicotiana tabacum HOM05D000650 ORTHO05D007302 2.2e-07 61.2 176 29.5
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 2.2e-07 61.2 102 32.4
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 2.2e-07 61.2 183 29.5
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 2.9e-07 60.8 373 25.7
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 2.9e-07 60.8 125 31.2
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 3.7e-07 60.5 412 24.3
QL11p025811 Quercus lobata HOM05D000650 ORTHO05D007302 3.7e-07 60.5 169 27.2
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 3.7e-07 60.5 215 28.8
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 4.9e-07 60.1 333 27.0
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 4.9e-07 60.1 200 24.0
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 4.9e-07 60.1 255 23.5
Duzib132G0086 Durio zibethinus HOM05D000650 ORTHO05D007302 4.9e-07 60.1 170 27.6
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 4.9e-07 60.1 185 25.9
Lj4g0020146 Lotus japonicus HOM05D000650 ORTHO05D007302 4.9e-07 60.1 197 29.4
TWI14G0488 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 4.9e-07 60.1 123 30.1
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 6.4e-07 59.7 204 30.4
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 6.4e-07 59.7 241 25.3
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 6.4e-07 59.7 241 25.3
Manes.07G043000 Manihot esculenta HOM05D000650 ORTHO05D007302 6.4e-07 59.7 167 27.5
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 6.4e-07 59.7 98 36.7
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 6.4e-07 59.7 217 23.5
GSVIVG01016047001 Vitis vinifera HOM05D003426 ORTHO05D003816 6.4e-07 59.7 102 40.2
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 8.4e-07 59.3 206 29.6
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 8.4e-07 59.3 186 29.6
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 8.4e-07 59.3 377 27.3
Lj4g0012325 Lotus japonicus HOM05D000650 ORTHO05D007302 8.4e-07 59.3 220 25.5
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 8.4e-07 59.3 322 26.7
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 8.4e-07 59.3 320 26.2
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 1.1e-06 58.9 144 29.9
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.1e-06 58.9 253 25.7
CANSAT54G0504 Cannabis sativa HOM05D000650 ORTHO05D007302 1.4e-06 58.5 198 28.3
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.4e-06 58.5 189 24.9
QL11p029380 Quercus lobata HOM05D000650 ORTHO05D007302 1.4e-06 58.5 181 29.8
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 1.9e-06 58.2 265 24.2
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.9e-06 58.2 235 23.4
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.9e-06 58.2 259 27.0
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 1.9e-06 58.2 205 27.8
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.9e-06 58.2 172 29.1
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 1.9e-06 58.2 184 29.3
QL11p025849 Quercus lobata HOM05D000650 ORTHO05D007302 1.9e-06 58.2 178 25.8
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.9e-06 58.2 223 25.6
Thecc.02G127100 Theobroma cacao HOM05D000650 ORTHO05D007302 1.9e-06 58.2 207 26.6
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 2.4e-06 57.8 152 30.3
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 2.4e-06 57.8 129 31.0
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 2.4e-06 57.8 203 24.6
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 2.4e-06 57.8 258 25.6
TPR.G36043 Trifolium pratense HOM05D000650 ORTHO05D007302 2.4e-06 57.8 129 30.2
CSS0023548 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D007302 3.2e-06 57.4 179 27.9
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.2e-06 57.4 175 29.1
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 4.1e-06 57.0 211 27.0
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.1e-06 57.0 190 26.3
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 4.1e-06 57.0 256 27.3
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 4.1e-06 57.0 307 25.4
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 4.1e-06 57.0 307 25.4
Lsat_1_v5_gn_5_90301 Lactuca sativa HOM05D003426 ORTHO05D003816 4.1e-06 57.0 98 35.7
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 5.4e-06 56.6 136 31.6
Manes.07G043100 Manihot esculenta HOM05D000650 ORTHO05D015160 5.4e-06 56.6 162 26.5
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 5.4e-06 56.6 166 24.7
Atru.chr6.1308 Acer truncatum HOM05D000650 ORTHO05D007302 7.1e-06 56.2 192 28.6
Gohir.D02G201700 Gossypium hirsutum HOM05D000650 ORTHO05D007302 7.1e-06 56.2 190 25.8
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 7.1e-06 56.2 117 29.9
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 7.1e-06 56.2 117 29.9
Lj4g0018033 Lotus japonicus HOM05D000650 ORTHO05D007302 7.1e-06 56.2 134 28.4
Lj4g0020470 Lotus japonicus HOM05D000650 ORTHO05D007302 7.1e-06 56.2 219 25.1
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 7.1e-06 56.2 208 26.0
Nitab4.5_0001671g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 7.1e-06 56.2 170 28.8
Os09g0421700 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 7.1e-06 56.2 183 29.0
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 7.1e-06 56.2 183 30.6
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 7.1e-06 56.2 224 24.1
TPR.G20268 Trifolium pratense HOM05D000650 ORTHO05D007302 7.1e-06 56.2 101 34.7
Zm00001eb388770 Zea mays HOM05D003426 ORTHO05D003816 7.1e-06 56.2 144 30.6
Ca_18401_v3 Cicer arietinum L. HOM05D000650 ORTHO05D007302 9.2e-06 55.8 177 27.7
Nitab4.5_0014595g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 9.2e-06 55.8 170 27.6
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 9.2e-06 55.8 196 26.0
RcHm_v2.0_Chr6g0270191 Rosa chinensis HOM05D000650 ORTHO05D007302 9.2e-06 55.8 95 36.8


User provided reference genes

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