Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.3e-187 657.5 326 100.0
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.2e-176 621.3 326 94.5
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.6e-119 432.2 284 73.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.1e-119 431.4 300 71.3
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.0e-118 430.6 285 73.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.0e-118 430.6 300 71.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.4e-118 430.3 285 73.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.8e-118 429.9 282 73.8
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.0e-118 429.1 300 71.0
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 4.0e-118 428.7 300 70.7
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 5.2e-118 428.3 300 71.0
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 1.5e-117 426.8 285 74.0
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.4e-117 425.6 282 74.1
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 4.4e-117 425.2 282 73.4
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 5.7e-117 424.9 286 73.8
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 7.5e-117 424.5 282 73.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.3e-116 423.7 288 71.2
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.7e-116 423.3 284 72.9
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 4.9e-116 421.8 286 73.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 8.3e-116 421.0 293 70.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.8e-115 419.9 287 73.2
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 3.1e-115 419.1 292 69.5
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.1e-115 419.1 285 71.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 5.4e-115 418.3 299 68.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.6e-114 416.8 285 71.6
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.0e-114 416.4 269 75.1
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.7e-114 416.0 285 70.9
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.0e-113 414.1 283 68.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.7e-113 413.3 269 75.1
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.3e-113 412.9 282 69.5
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.3e-113 412.9 279 71.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.8e-113 412.1 291 71.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.8e-113 412.1 282 72.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 6.6e-113 411.4 292 67.8
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 6.6e-113 411.4 301 66.8
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 8.6e-113 411.0 285 69.8
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.1e-112 410.6 289 70.6
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.1e-112 410.6 285 69.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.9e-112 409.8 285 68.8
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.6e-112 408.3 281 69.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 7.3e-112 407.9 281 70.8
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 7.3e-112 407.9 280 70.0
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 7.3e-112 407.9 279 71.3
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.2e-111 407.1 282 68.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-111 407.1 270 73.7
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.2e-111 407.1 280 69.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 3.6e-111 405.6 304 67.1
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 8.0e-111 404.4 304 66.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 8.0e-111 404.4 300 67.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.0e-110 404.1 280 70.4
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.0e-110 404.1 280 70.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.8e-110 403.3 323 63.2
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.8e-110 403.3 284 69.7
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.3e-110 402.9 291 67.7
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.0e-110 402.5 286 69.6
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.0e-110 402.5 275 71.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 3.0e-110 402.5 301 68.1
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.8e-110 401.4 278 70.5
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 3.4e-109 399.1 321 64.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 5.7e-109 398.3 285 66.0
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 5.7e-109 398.3 282 67.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 7.5e-109 397.9 280 67.9
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 9.8e-109 397.5 285 68.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.2e-108 396.4 283 67.1
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.9e-108 396.0 280 66.8
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.9e-108 396.0 282 67.4
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.9e-108 395.2 281 67.6
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 8.3e-108 394.4 281 67.3
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.4e-107 392.9 260 72.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 7.0e-107 391.3 281 66.5
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 7.0e-107 391.3 250 76.4
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.6e-106 390.2 281 66.2
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.6e-106 390.2 267 69.7
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.7e-106 389.4 267 69.3
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 2.7e-106 389.4 304 63.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.0e-105 387.5 303 63.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.7e-105 386.7 337 60.2
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.0e-105 386.0 299 63.9
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.9e-105 385.6 303 64.4
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 6.6e-105 384.8 269 68.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.5e-104 382.9 269 68.4
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.5e-104 382.9 306 62.4
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.5e-104 380.9 300 64.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-103 380.6 269 67.7
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.1e-103 379.8 303 63.7
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 4.7e-103 378.6 266 68.8
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.9e-102 374.4 283 65.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.4e-101 372.5 272 67.6
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-99 367.1 294 62.2
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-99 366.7 264 67.4
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 5.4e-99 365.2 294 61.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.9e-97 359.0 281 63.7
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 5.0e-97 358.6 285 62.1
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 2.5e-96 356.3 285 63.2
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.4e-94 350.5 280 65.0
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.3e-94 349.7 294 60.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 8.9e-94 347.8 286 62.2
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-93 347.4 265 65.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.4e-93 345.9 279 61.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.4e-93 345.5 260 66.2
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.2e-92 343.2 264 66.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.9e-92 342.8 261 65.1
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 5.4e-91 338.6 255 67.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 4.6e-90 335.5 258 63.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.0e-89 332.8 279 59.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.5e-88 329.7 273 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.3e-88 328.9 251 64.5
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.8e-87 326.2 251 64.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.2e-87 325.1 257 63.0
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.6e-82 310.5 251 63.7
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.5e-80 303.9 235 64.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.6e-79 300.4 275 55.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.5e-77 293.9 271 55.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 2.6e-77 293.1 193 71.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.2e-75 286.2 251 58.2
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 7.1e-75 285.0 205 67.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 2.7e-74 283.1 208 66.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.3e-73 280.0 236 61.4
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.8e-71 272.3 286 53.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.7e-60 237.3 221 56.1
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 6.7e-57 225.3 285 42.5
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 2.5e-56 223.4 282 46.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 9.6e-56 221.5 259 49.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.5e-48 197.6 274 41.2
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.5e-45 187.6 135 68.1
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.0e-45 187.2 124 72.6
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 7.6e-45 185.3 271 37.6
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.1e-43 181.4 123 74.0
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.0e-41 174.9 133 62.4
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-37 158.7 144 59.7
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.8e-30 137.5 88 71.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 9.1e-30 135.2 120 57.5
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.2e-28 130.6 91 71.4
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 5.0e-28 129.4 83 69.9
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 8.8e-25 118.6 83 66.3
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 2.6e-21 107.1 287 27.9
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.0e-20 102.8 240 30.8
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 7.2e-19 99.0 74 63.5
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.6e-18 97.8 275 30.5
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-16 90.9 83 53.0
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.7e-15 87.8 257 28.8
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.1e-14 85.1 58 62.1
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 9.1e-14 82.0 283 26.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 2.0e-13 80.9 56 66.1
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.9e-13 79.3 54 64.8
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.0e-12 78.6 81 51.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 5.0e-12 76.3 54 64.8
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.9e-11 74.3 129 36.4
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 2.1e-10 70.9 315 24.1
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 8.0e-10 68.9 315 23.8
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 8.0e-10 68.9 47 61.7
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 4.4e-08 63.2 39 71.8
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.3e-07 61.6 40 67.5
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 9.1e-06 55.5 129 32.6
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 9.1e-06 55.5 129 32.6


User provided reference genes

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