Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.3e-278 959.9 478 100.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.7e-197 693.0 519 66.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.0e-191 673.7 521 64.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-189 666.8 508 67.3
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.7e-189 666.4 500 66.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 4.1e-188 661.8 524 64.1
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.0e-186 654.8 514 63.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.2e-182 643.7 495 64.8
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.4e-182 642.1 514 62.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 7.5e-182 641.0 514 62.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.8e-181 639.0 496 64.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.8e-181 639.0 513 63.2
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.7e-181 638.6 494 64.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 4.8e-181 638.3 515 62.3
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.4e-180 636.0 508 63.4
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 7.0e-180 634.4 520 63.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.2e-179 633.6 530 61.7
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.0e-179 632.9 505 64.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.7e-179 632.5 493 64.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 6.5e-178 627.9 514 62.8
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 8.5e-178 627.5 519 62.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 8.5e-178 627.5 501 63.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 8.5e-178 627.5 499 63.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-177 626.7 521 62.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-177 626.3 514 62.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.2e-177 625.5 514 62.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 5.5e-177 624.8 491 63.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 9.4e-177 624.0 492 63.6
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 9.4e-177 624.0 501 63.3
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.1e-176 622.9 509 62.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 6.1e-176 621.3 487 64.5
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.1e-176 621.3 495 63.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.2e-175 618.2 516 61.8
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.4e-174 615.5 515 61.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.4e-174 615.5 511 61.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.7e-174 614.8 513 61.4
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 9.8e-174 614.0 508 62.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.2e-173 612.8 518 60.6
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-173 612.8 508 62.2
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 3.7e-173 612.1 508 61.0
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.3e-173 611.3 515 61.7
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 6.3e-173 611.3 512 61.5
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 6.3e-173 611.3 480 64.2
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 8.3e-173 610.9 497 63.0
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.8e-172 609.8 508 61.8
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.8e-172 609.8 493 62.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.1e-172 609.0 493 63.1
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.0e-172 607.8 511 62.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 9.1e-172 607.4 503 64.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.6e-171 606.7 511 61.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.7e-171 605.9 526 60.1
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.5e-171 605.5 498 62.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.5e-171 605.1 525 61.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.7e-170 603.2 518 60.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.7e-170 603.2 476 64.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 3.8e-170 602.1 496 62.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 5.0e-170 601.7 487 62.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.0e-170 601.7 494 61.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.1e-169 600.5 495 62.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.9e-169 599.7 490 61.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.9e-169 599.7 524 60.3
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 9.5e-169 597.4 515 60.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 9.5e-169 597.4 573 56.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 2.1e-168 596.3 518 60.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.6e-168 595.5 503 62.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-168 594.7 527 59.4
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 8.9e-167 590.9 532 58.8
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 8.9e-167 590.9 501 60.7
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.5e-166 590.1 494 60.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 2.6e-166 589.3 494 60.3
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 7.5e-166 587.8 493 62.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 9.8e-166 587.4 507 61.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 9.8e-166 587.4 487 62.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 6.4e-165 584.7 513 59.8
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.0e-163 579.7 495 60.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.8e-163 577.8 496 60.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 6.6e-162 574.7 531 57.4
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.9e-161 573.2 451 64.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.1e-160 569.7 487 62.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.2e-159 565.1 497 58.8
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.6e-158 562.8 445 64.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 8.3e-157 557.8 484 59.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 8.3e-157 557.8 484 59.5
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.3e-157 557.8 515 57.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.7e-155 552.7 485 59.8
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.8e-155 551.2 505 57.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 5.0e-154 548.5 505 56.8
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.3e-153 545.4 517 57.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.1e-152 543.1 436 63.8
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 4.7e-152 542.0 474 60.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 5.2e-151 538.5 504 56.9
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.5e-150 537.0 494 56.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.7e-149 533.5 529 54.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 8.6e-146 521.2 514 55.1
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.3e-145 518.8 482 57.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.6e-144 516.9 453 60.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.8e-144 516.2 453 60.0
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 6.2e-144 515.0 540 51.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.0e-143 512.3 482 56.0
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 5.2e-143 511.9 499 55.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-137 491.5 421 60.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.1e-135 486.1 474 56.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.9e-133 478.8 511 50.3
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 8.4e-133 478.0 443 56.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-132 477.6 475 54.9
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-131 473.8 369 66.1
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.6e-128 463.8 367 64.3
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.0e-127 459.1 367 63.5
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 6.9e-127 458.4 478 51.9
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.6e-126 456.4 529 49.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 9.9e-126 454.5 497 49.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 7.1e-124 448.4 538 47.6
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.3e-121 439.5 457 53.4
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.3e-121 439.1 489 48.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 7.4e-121 438.3 283 74.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.0e-119 432.6 392 58.4
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.5e-118 430.6 269 75.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.4e-118 429.5 392 58.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.2e-116 422.5 524 45.2
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.3e-105 386.3 354 59.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.8e-98 364.0 551 40.7
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.7e-97 359.0 403 51.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.0e-90 336.7 366 52.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.5e-89 334.3 344 56.4
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.0e-82 310.1 217 70.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.5e-77 292.0 479 42.8
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.0e-74 283.5 297 53.9
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.5e-68 264.6 245 55.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.7e-67 259.6 219 58.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.8e-66 257.7 374 44.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-66 256.1 258 54.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 4.5e-62 243.0 259 47.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.9e-62 242.7 164 70.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 7.5e-57 225.7 256 47.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-56 224.2 293 49.5
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.3e-52 210.3 410 39.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.0e-51 205.7 144 66.0
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.4e-50 204.9 127 73.2
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.0e-50 203.8 143 65.7
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.6e-49 200.7 327 39.8
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.4e-47 193.0 193 55.4
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.6e-36 156.4 100 72.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-34 151.4 106 65.1
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.6e-33 147.5 165 48.5
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.2e-31 139.0 166 54.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.4e-26 125.2 217 41.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.4e-25 120.6 68 82.4
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.4e-25 120.6 338 30.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.1e-11 74.7 51 58.8
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.0e-10 70.5 45 73.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.9e-08 64.3 54 53.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.2e-07 60.5 38 73.7


User provided reference genes

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