Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0962 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.2e-32 142.9 68 100.0
CDE02G4659 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 2.7e-21 105.1 53 94.3
Nn4g22245 Nelumbo nucifera HOM05D000350 ORTHO05D000228 2.4e-09 65.5 49 65.3
Cfa007207 Carpinus fangiana HOM05D000350 ORTHO05D000228 5.4e-09 64.3 58 58.6
Haze_14898 Corylus avellana HOM05D000350 ORTHO05D000228 5.4e-09 64.3 93 41.9
TAR629G0902 Trochodendron aralioides HOM05D000350 ORTHO05D000228 5.4e-09 64.3 67 52.2
arahy.Tifrunner.gnm1.ann1.KNN8RN Arachis hypogaea HOM05D000350 ORTHO05D000228 9.2e-09 63.5 56 57.1
arahy.Tifrunner.gnm1.ann1.XF5UIG Arachis hypogaea HOM05D000350 ORTHO05D000228 9.2e-09 63.5 56 57.1
Potri.001G327100 Populus trichocarpa HOM05D000350 ORTHO05D000228 9.2e-09 63.5 51 60.8
CiPaw.04G039400 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.6e-08 62.8 95 40.0
Nn3g16385 Nelumbo nucifera HOM05D000350 ORTHO05D000228 1.6e-08 62.8 49 61.2
PSO478G3234 Papaver somniferum HOM05D000350 ORTHO05D000228 2.0e-08 62.4 72 52.8
RcHm_v2.0_Chr2g0175971 Rosa chinensis HOM05D000350 ORTHO05D000228 2.0e-08 62.4 50 58.0
Gohir.D04G075200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.5e-08 61.6 94 39.4
Gorai.012G084600 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.5e-08 61.6 94 39.4
CANSAT64G1794 Cannabis sativa HOM05D000350 ORTHO05D000228 4.5e-08 61.2 48 60.4
CsaV3_3G026870 Cucumis sativus L. HOM05D000350 ORTHO05D000228 4.5e-08 61.2 56 57.1
Glyma.19G095300 Glycine max HOM05D000350 ORTHO05D000228 4.5e-08 61.2 52 59.6
CiPaw.03G058100 Carya illinoinensis HOM05D000350 ORTHO05D000228 5.9e-08 60.8 90 43.3
MELO3C014903.2 Cucumis melo HOM05D000350 ORTHO05D000228 5.9e-08 60.8 56 57.1
PSO017G7103 Papaver somniferum HOM05D000350 ORTHO05D000228 5.9e-08 60.8 68 51.5
ClCG05G013720 Citrullus lanatus HOM05D000350 ORTHO05D000228 7.8e-08 60.5 48 60.4
QL02p070859 Quercus lobata HOM05D000350 ORTHO05D000228 7.8e-08 60.5 48 60.4
Sabra16G0209500 Salix brachista HOM05D000350 ORTHO05D000228 7.8e-08 60.5 50 58.0
Duzib264G0804 Durio zibethinus HOM05D000350 ORTHO05D000228 1.3e-07 59.7 101 38.6
Gohir.A05G336700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.3e-07 59.7 94 38.3
Gorai.001G273300 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.3e-07 59.7 94 38.3
Oeu035242.1 Olea europaea HOM05D000350 ORTHO05D000228 1.3e-07 59.7 48 62.5
Duzib187G1441 Durio zibethinus HOM05D000350 ORTHO05D000228 1.7e-07 59.3 93 38.7
Sed0024351 Sechium edule HOM05D000350 ORTHO05D000228 1.7e-07 59.3 56 55.4
Psat3g162880 Pisum sativum HOM05D000350 ORTHO05D000228 2.3e-07 58.9 53 56.6
Thecc.04G040300 Theobroma cacao HOM05D000350 ORTHO05D000228 2.3e-07 58.9 93 38.7
CAN.G473.122 Capsicum annuum HOM05D000350 ORTHO05D000228 3.9e-07 58.2 51 60.8
Duzib147G0245 Durio zibethinus HOM05D000350 ORTHO05D000228 3.9e-07 58.2 52 51.9
Manes.04G088500 Manihot esculenta HOM05D000350 ORTHO05D000228 3.9e-07 58.2 49 55.1
Manes.11G083000 Manihot esculenta HOM05D000350 ORTHO05D000228 3.9e-07 58.2 58 51.7
PSO017G0744 Papaver somniferum HOM05D000350 ORTHO05D000228 3.9e-07 58.2 55 60.0
CAN.G1525.3 Capsicum annuum HOM05D000350 ORTHO05D000228 5.0e-07 57.8 50 54.0
COL.COLO4_13292 Corchorus olitorius HOM05D000350 ORTHO05D000228 5.0e-07 57.8 94 40.4
HanXRQChr07g0198131 Helianthus annuus HOM05D000350 ORTHO05D000228 5.0e-07 57.8 56 50.0
PSO478G4219 Papaver somniferum HOM05D000350 ORTHO05D000228 5.0e-07 57.8 54 57.4
Sed0020156 Sechium edule HOM05D000350 ORTHO05D000228 5.0e-07 57.8 48 58.3
Ciclev10015977m.g Citrus clementina HOM05D000350 ORTHO05D000228 6.6e-07 57.4 58 53.4
MD17G1002500 Malus domestica HOM05D000350 ORTHO05D000228 6.6e-07 57.4 53 58.5
CSS0049039 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 8.6e-07 57.0 50 56.0
TAR371G0550 Trochodendron aralioides HOM05D000918 ORTHO05D000228 8.6e-07 57.0 48 56.2
Cpa.g.sc70.118 Carica papaya HOM05D000350 ORTHO05D000228 1.1e-06 56.6 48 56.2
FAN02G1392 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.1e-06 56.6 50 56.0
FAN05G4127 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.1e-06 56.6 50 56.0
FAN09G2515 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.1e-06 56.6 50 56.0
FAN14G4523 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.1e-06 56.6 50 56.0
Nitab4.5_0007375g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.1e-06 56.6 51 56.9
TPR.G8574 Trifolium pratense HOM05D000350 ORTHO05D000228 1.1e-06 56.6 48 60.4
HPP92_006995 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.1e-06 56.6 49 55.1
HanXRQChr09g0256441 Helianthus annuus HOM05D000350 ORTHO05D000228 1.5e-06 56.2 54 55.6
Peaxi162Scf00420g00064 Petunia axillaris HOM05D000350 ORTHO05D000228 1.5e-06 56.2 78 43.6
Gohir.A07G230200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.9e-06 55.8 94 36.2
Lsat_1_v5_gn_2_94320 Lactuca sativa HOM05D000350 ORTHO05D000228 1.9e-06 55.8 56 57.1
Lalb_Chr22g0360271 Lupinus albus HOM05D000350 ORTHO05D000228 1.9e-06 55.8 56 57.1
Prupe.3G308700 Prunus persica HOM05D000350 ORTHO05D000228 1.9e-06 55.8 51 58.8
TWI32G0247 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.9e-06 55.8 50 56.0
TAR622G0201 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.9e-06 55.8 48 58.3
Actinidia36216 Actinidia chinensis HOM05D000350 ORTHO05D000228 2.5e-06 55.5 42 57.1
Dinv25646 Davidia involucrata HOM05D000350 ORTHO05D000228 2.5e-06 55.5 50 60.0
Oeu062525.1 Olea europaea HOM05D000350 ORTHO05D000228 2.5e-06 55.5 49 61.2
AT3G27010 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 3.3e-06 55.1 86 37.2
MD09G1008300 Malus domestica HOM05D000350 ORTHO05D000228 3.3e-06 55.1 54 57.4
Sc03g0006340 Simmondsia chinensis HOM05D000350 ORTHO05D000228 3.3e-06 55.1 52 51.9
VMungo1383G3709 Vigna mungo HOM05D000350 ORTHO05D000228 3.3e-06 55.1 49 57.1
Ca_26316_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 4.3e-06 54.7 49 53.1
Gohir.A09G037265 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-06 54.7 48 56.2
Gohir.A10G071300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-06 54.7 93 38.7
Gohir.D09G038300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-06 54.7 48 56.2
Gohir.D10G079800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-06 54.7 93 38.7
Gorai.006G043800 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.3e-06 54.7 48 56.2
Medtr7g028160 Medicago truncatula HOM05D000350 ORTHO05D000228 4.3e-06 54.7 62 53.2
Cc07_g01000 Coffea canephora HOM05D000350 ORTHO05D000228 5.6e-06 54.3 51 54.9
Lj1g0021676 Lotus japonicus HOM05D000350 ORTHO05D000228 5.6e-06 54.3 49 57.1
Potri.017G068748 Populus trichocarpa HOM05D000350 ORTHO05D000228 5.6e-06 54.3 58 51.7
THA.LOC104825633 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 5.6e-06 54.3 53 54.7
Ciclev10032374m.g Citrus clementina HOM05D000350 ORTHO05D000228 7.3e-06 53.9 49 53.1
TAR374G0904 Trochodendron aralioides HOM05D000350 ORTHO05D000228 7.3e-06 53.9 96 37.5
HPP92_000343 Vanilla planifolia HOM05D000350 ORTHO05D000228 7.3e-06 53.9 49 51.0
CiPaw.06G105800 Carya illinoinensis HOM05D000350 ORTHO05D000228 9.5e-06 53.5 47 55.3
Thhalv10004391m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 9.5e-06 53.5 82 39.0
FvH4_6g53830 Fragaria vesca HOM05D000350 ORTHO05D000228 9.5e-06 53.5 50 54.0
Lalb_Chr00c01g0403801 Lupinus albus HOM05D000350 ORTHO05D000228 9.5e-06 53.5 51 54.9


User provided reference genes

Program Settings