Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 4.0e-161 572.4 587 100.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.9e-96 355.9 587 72.2
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.7e-93 346.3 587 71.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 5.7e-91 339.3 587 72.1
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 7.5e-91 339.0 585 69.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.2e-90 337.4 587 71.9
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.4e-89 334.0 587 71.4
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 3.1e-89 333.6 586 72.5
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 7.0e-89 332.4 587 74.3
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.9e-88 329.3 588 69.6
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 7.7e-88 328.9 587 72.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 7.7e-88 328.9 585 66.7
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 3.8e-87 326.6 587 67.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 5.0e-87 326.2 593 69.8
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.0e-87 326.2 584 66.1
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 6.5e-87 325.9 587 71.4
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.5e-86 323.9 587 69.8
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 3.2e-86 323.6 587 70.4
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.2e-86 323.6 584 70.2
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.5e-86 322.8 585 70.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 7.2e-86 322.4 588 76.9
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.2e-85 321.6 585 70.3
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 8.0e-85 318.9 584 76.9
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-83 315.1 593 70.3
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 4.4e-83 313.2 585 71.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 9.8e-83 312.0 587 71.0
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.4e-81 308.1 587 71.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 7.0e-81 305.8 589 66.6
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.6e-80 304.7 565 76.6
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.7e-80 303.9 587 68.8
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 3.5e-80 303.5 587 73.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.3e-79 301.6 585 71.8
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-79 301.2 590 61.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.1e-78 298.5 587 70.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.5e-78 297.4 587 72.2
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 9.5e-78 295.4 587 69.8
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.7e-77 293.1 585 72.0
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 6.1e-77 292.7 585 73.0
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 8.0e-77 292.4 600 67.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.4e-75 287.0 584 74.3
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 3.4e-75 287.0 587 71.9
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 9.8e-75 285.4 585 65.5
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.2e-74 284.3 587 64.2
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.1e-73 282.0 583 67.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.8e-73 281.2 507 70.4
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 2.4e-73 280.8 585 65.1
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.4e-73 279.6 321 64.8
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 5.4e-73 279.6 587 68.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 9.2e-73 278.9 587 72.9
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.6e-72 278.1 586 51.0
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.0e-72 277.7 588 71.9
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.5e-72 276.6 511 71.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 5.9e-72 276.2 631 67.8
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.3e-71 274.2 598 58.7
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.8e-71 273.5 521 61.0
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 6.6e-71 272.7 585 70.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.6e-71 272.3 599 64.3
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.3e-70 270.0 585 70.4
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 4.3e-70 270.0 587 67.1
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 9.5e-70 268.9 585 73.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.2e-69 268.5 600 63.3
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.0e-68 265.4 587 62.9
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.8e-68 264.6 587 63.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.3e-68 264.2 605 70.1
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 5.2e-68 263.1 566 71.7
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 1.5e-67 261.5 586 62.6
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.0e-67 261.2 577 55.1
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 9.8e-67 258.8 589 62.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.3e-66 258.5 565 72.9
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.1e-65 255.4 587 63.5
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.4e-65 254.2 587 62.7
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.4e-65 254.2 590 60.5
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.4e-65 254.2 588 70.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.1e-65 253.4 317 68.5
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 5.4e-65 253.1 587 68.1
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 5.9e-64 249.6 587 64.2
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 5.0e-63 246.5 592 61.1
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 6.6e-63 246.1 420 69.8
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 6.6e-63 246.1 583 63.3
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 3.3e-62 243.8 559 62.1
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 5.6e-62 243.0 687 60.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 2.6e-59 234.2 592 60.0
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 4.1e-57 226.9 438 71.7
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.3e-55 221.1 565 64.4
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 3.9e-55 220.3 537 61.1
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.3e-54 217.2 588 61.9
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.2e-53 215.3 646 53.4
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.1e-53 214.5 565 59.8
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.1e-53 214.5 566 65.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.1e-53 212.6 317 54.9
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 6.8e-52 209.5 588 62.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 8.9e-52 209.1 564 60.3
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 5.8e-51 206.5 513 61.0
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.7e-50 203.8 240 58.3
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 6.4e-50 203.0 561 36.4
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 3.5e-48 197.2 222 60.4
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 3.5e-48 197.2 594 57.7
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 2.8e-45 187.6 587 61.3
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 4.4e-43 180.3 594 52.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.3e-42 178.7 560 53.2
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.3e-39 167.9 367 55.6
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 9.6e-38 162.5 297 47.5
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 4.6e-32 143.7 143 57.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 2.6e-27 127.9 198 53.5
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.1e-25 122.5 246 39.0
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.3e-23 115.5 75 73.3
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 5.1e-23 113.6 75 70.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 5.1e-23 113.6 75 70.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.5e-22 112.1 75 69.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 3.3e-22 110.9 75 69.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.8e-21 107.8 98 57.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.1e-20 105.9 142 42.3
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 9.3e-17 92.8 84 56.0
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-16 92.0 102 75.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.1e-16 91.7 98 51.0
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 6.7e-15 86.7 60 63.3
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 6.7e-15 86.7 98 76.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 6.9e-12 76.6 113 65.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 6.9e-12 76.6 113 65.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 6.9e-12 76.6 113 65.5
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 9.0e-12 76.3 60 56.7
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 1.5e-11 75.5 53 62.3
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.0e-10 72.8 296 28.7
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.3e-10 72.4 75 41.3
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.2e-10 71.6 44 79.5
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.8e-10 70.9 226 47.3
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 7.4e-06 56.6 39 69.2


User provided reference genes

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