Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0827 Ceratophyllum demersum HOM05D005595 ORTHO05D006962 1.8e-66 255.8 128 100.0
Dinv33365 Davidia involucrata HOM05D005595 ORTHO05D006962 7.4e-52 207.2 142 73.9
Dinv37839 Davidia involucrata HOM05D005595 ORTHO05D006962 1.6e-51 206.1 142 73.2
Manes.17G105900 Manihot esculenta HOM05D005595 ORTHO05D006962 1.6e-51 206.1 141 73.8
Nn1g08708 Nelumbo nucifera HOM05D005595 ORTHO05D006962 1.6e-51 206.1 139 74.8
Nn3g20286 Nelumbo nucifera HOM05D005595 ORTHO05D006962 1.6e-51 206.1 142 73.2
HanXRQChr08g0233931 Helianthus annuus HOM05D005595 ORTHO05D006962 4.8e-51 204.5 141 72.3
Oeu035209.1 Olea europaea HOM05D005595 ORTHO05D006962 1.1e-50 203.4 142 69.7
Nitab4.5_0000401g0090 Nicotiana tabacum HOM05D005595 ORTHO05D006962 1.4e-50 203.0 134 74.6
Nitab4.5_0006964g0020 Nicotiana tabacum HOM05D005595 ORTHO05D006962 1.4e-50 203.0 134 74.6
CiPaw.03G052400 Carya illinoinensis HOM05D005595 ORTHO05D006962 1.8e-50 202.6 133 76.7
CANSAT64G2788 Cannabis sativa HOM05D005595 ORTHO05D006962 2.4e-50 202.2 135 74.1
ECA232G1699 Erigeron canadensis HOM05D005595 ORTHO05D006962 3.1e-50 201.8 136 72.8
Solyc09g092090.4 Solanum lycopersicum HOM05D005595 ORTHO05D006962 4.1e-50 201.4 132 76.5
Sopen09g034960 Solanum pennellii HOM05D005595 ORTHO05D006962 4.1e-50 201.4 132 76.5
PGSC0003DMG400026415 Solanum tuberosum HOM05D005595 ORTHO05D006962 4.1e-50 201.4 132 76.5
TAR633G2523 Trochodendron aralioides HOM05D005595 ORTHO05D006962 4.1e-50 201.4 132 77.3
MSTRG.15560 Avicennia marina HOM05D005595 ORTHO05D006962 6.9e-50 200.7 139 72.7
Migut.G01349 Erythranthe guttata HOM05D005595 ORTHO05D006962 6.9e-50 200.7 141 70.2
GSVIVG01001821001 Vitis vinifera HOM05D005595 ORTHO05D006962 6.9e-50 200.7 135 75.6
Potri.017G066000 Populus trichocarpa HOM05D005595 ORTHO05D006962 1.2e-49 199.9 132 75.0
Ah.09g228170 Amaranthus hybridus HOM05D005595 ORTHO05D006962 1.5e-49 199.5 136 72.1
AUR62029058 Chenopodium quinoa HOM05D005595 ORTHO05D006962 2.0e-49 199.1 141 70.9
Thecc.08G161400 Theobroma cacao HOM05D005595 ORTHO05D006962 2.6e-49 198.7 136 73.5
Eucgr.J02309 Eucalyptus grandis HOM05D005595 ORTHO05D006962 3.4e-49 198.4 142 69.0
Duzib041G0186 Durio zibethinus HOM05D005595 ORTHO05D006962 4.5e-49 198.0 136 72.8
Gohir.A05G246900 Gossypium hirsutum HOM05D005595 ORTHO05D006962 5.8e-49 197.6 133 75.2
Gohir.D05G248400 Gossypium hirsutum HOM05D005595 ORTHO05D006962 5.8e-49 197.6 133 75.2
Gorai.009G259400 Gossypium raimondii HOM05D005595 ORTHO05D006962 5.8e-49 197.6 133 75.2
SGA_v2.0_scaffold47G17577 Striga asiatica HOM05D005595 ORTHO05D006962 5.8e-49 197.6 141 69.5
THA.LOC104809576 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 7.6e-49 197.2 135 70.4
Duzib093G1178 Durio zibethinus HOM05D005595 ORTHO05D006962 1.7e-48 196.1 136 71.3
THA.LOC104813780 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 1.7e-48 196.1 140 67.9
FvH4_6g53020 Fragaria vesca HOM05D005595 ORTHO05D006962 2.2e-48 195.7 140 70.0
Prupe.3G148400 Prunus persica HOM05D005595 ORTHO05D006962 2.2e-48 195.7 135 71.1
Potri.001G334000 Populus trichocarpa HOM05D005595 ORTHO05D006962 2.9e-48 195.3 132 73.5
TWI59G1157 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 2.9e-48 195.3 141 70.2
Cc07_g00580 Coffea canephora HOM05D005595 ORTHO05D006962 5.0e-48 194.5 134 71.6
RcHm_v2.0_Chr2g0174761 Rosa chinensis HOM05D005595 ORTHO05D006962 5.0e-48 194.5 135 71.1
Aqoxy5G03493 Aquilegia oxysepala HOM05D005595 ORTHO05D006962 8.4e-48 193.7 135 71.9
Aa31LG5G10920 Aethionema arabicum HOM05D005595 ORTHO05D006962 1.1e-47 193.4 138 69.6
Glyma.19G075200 Glycine max HOM05D005595 ORTHO05D006962 1.1e-47 193.4 138 69.6
Glyma.19G180500 Glycine max HOM05D005595 ORTHO05D006962 1.1e-47 193.4 138 69.6
Lsat_1_v5_gn_4_185480 Lactuca sativa HOM05D005595 ORTHO05D006962 1.1e-47 193.4 139 71.9
PSO063G5361 Papaver somniferum HOM05D005595 ORTHO05D006962 1.1e-47 193.4 136 71.3
Phvul.010G007100 Phaseolus vulgaris HOM05D005595 ORTHO05D006962 1.1e-47 193.4 138 70.3
FAN05G0361 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.4e-47 193.0 138 70.3
TWI23G0028 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 1.9e-47 192.6 140 70.0
RcHm_v2.0_Chr4g0409361 Rosa chinensis HOM05D005595 ORTHO05D006962 2.5e-47 192.2 136 70.6
TAR625G0935 Trochodendron aralioides HOM05D005595 ORTHO05D006962 2.5e-47 192.2 126 78.6
Glyma.20G058200 Glycine max HOM05D005595 ORTHO05D006962 3.2e-47 191.8 138 68.8
Peaxi162Scf00753g00428 Petunia axillaris HOM05D005595 ORTHO05D006962 3.2e-47 191.8 128 75.0
PGR083G2585 Punica granatum HOM05D005595 ORTHO05D006962 3.2e-47 191.8 140 70.0
BcaNung05589 Brassica carinata HOM05D005595 ORTHO05D006962 4.2e-47 191.4 142 68.3
MD17G1015300 Malus domestica HOM05D005595 ORTHO05D006962 4.2e-47 191.4 134 70.9
Sed0017898 Sechium edule HOM05D005595 ORTHO05D006962 4.2e-47 191.4 135 70.4
Hund25939 Selenicereus undatus HOM05D005595 ORTHO05D006962 4.2e-47 191.4 132 74.2
Peaxi162Scf00047g00333 Petunia axillaris HOM05D005595 ORTHO05D006962 9.3e-47 190.3 128 74.2
Thhalv10021543m.g Eutrema salsugineum HOM05D005595 ORTHO05D006962 1.6e-46 189.5 135 70.4
HPP92_011547 Vanilla planifolia HOM05D005595 ORTHO05D006962 1.6e-46 189.5 130 73.1
EL10Ac8g19198 Beta vulgaris HOM05D005595 ORTHO05D006962 2.1e-46 189.1 129 72.9
CAN.G1333.9 Capsicum annuum HOM05D005595 ORTHO05D006962 3.5e-46 188.3 127 74.0
Oeu013953.1 Olea europaea HOM05D005595 ORTHO05D006962 3.5e-46 188.3 134 68.7
Carub.0003s0027 Capsella rubella HOM05D005595 ORTHO05D006962 6.1e-46 187.6 140 66.4
AUR62034098 Chenopodium quinoa HOM05D005595 ORTHO05D006962 6.1e-46 187.6 129 72.9
PSO782G0616 Papaver somniferum HOM05D005595 ORTHO05D006962 6.1e-46 187.6 136 69.9
Atru.chr6.2514 Acer truncatum HOM05D005595 ORTHO05D006962 7.9e-46 187.2 134 71.6
Ciclev10016747m.g Citrus clementina HOM05D005595 ORTHO05D006962 7.9e-46 187.2 135 68.1
Thecc.04G030300 Theobroma cacao HOM05D005595 ORTHO05D006962 7.9e-46 187.2 136 69.1
AT3G01790 Arabidopsis thaliana HOM05D005595 ORTHO05D006962 1.0e-45 186.8 140 66.4
Lj3A195G12 Lonicera japonica HOM05D005595 ORTHO05D006962 2.3e-45 185.7 142 68.3
Os08g0162033 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 2.3e-45 185.7 142 65.5
AL3G10340 Arabidopsis lyrata HOM05D005595 ORTHO05D006962 3.9e-45 184.9 140 65.7
Lalb_Chr05g0227671 Lupinus albus HOM05D005595 ORTHO05D006962 5.1e-45 184.5 134 68.7
Ca_16345_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 6.7e-45 184.1 134 69.4
VMungo1127G0708 Vigna mungo HOM05D005595 ORTHO05D006962 8.7e-45 183.7 138 65.2
Zm00001eb144650 Zea mays HOM05D005595 ORTHO05D006962 8.7e-45 183.7 118 76.3
CsaV3_6G042550 Cucumis sativus L. HOM05D005595 ORTHO05D006962 1.5e-44 183.0 135 68.9
Haze_14834 Corylus avellana HOM05D005595 ORTHO05D006962 3.3e-44 181.8 140 67.1
MBI10_g24386_MAGBIO Magnolia biondii HOM05D005595 ORTHO05D006962 7.4e-44 180.6 142 69.0
Ca_04418_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 9.7e-44 180.3 134 67.2
SEGI_32901 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 1.6e-43 179.5 131 66.4
ATR0723G078 Amborella trichopoda HOM05D005595 ORTHO05D006962 2.2e-43 179.1 124 73.4
LjContig00102g0027903 Lotus japonicus HOM05D005595 ORTHO05D006962 3.7e-43 178.3 134 66.4
Psat5g104400 Pisum sativum HOM05D005595 ORTHO05D006962 3.7e-43 178.3 134 64.9
SEGI_22376 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 1.1e-42 176.8 129 66.7
FvH4_4g11850 Fragaria vesca HOM05D005595 ORTHO05D006962 1.8e-42 176.0 141 65.2
Zm00001eb365700 Zea mays HOM05D005595 ORTHO05D006962 2.4e-42 175.6 132 68.2
arahy.Tifrunner.gnm1.ann1.AY8PV2 Arachis hypogaea HOM05D005595 ORTHO05D006962 3.1e-42 175.3 150 62.0
QL02p072441 Quercus lobata HOM05D005595 ORTHO05D006962 3.1e-42 175.3 137 68.6
CARHR075140 Cardamine hirsuta HOM05D005595 ORTHO05D006962 5.3e-42 174.5 135 65.2
Os05g0243300 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.5e-41 172.9 128 68.0
arahy.Tifrunner.gnm1.ann1.HCN1MH Arachis hypogaea HOM05D005595 ORTHO05D006962 2.0e-41 172.6 147 62.6
vmacro18324 Vaccinium macrocarpon HOM05D005595 ORTHO05D006962 2.0e-41 172.6 163 59.5
Medtr3g082760 Medicago truncatula HOM05D005595 ORTHO05D006962 3.4e-41 171.8 134 62.7
TPR.G22469 Trifolium pratense HOM05D000829 ORTHO05D006962 3.4e-41 171.8 134 64.2
MELO3C007496.2 Cucumis melo HOM05D005595 ORTHO05D006962 1.0e-40 170.2 143 63.6
Sc18g0002160 Simmondsia chinensis HOM05D005595 ORTHO05D006962 1.7e-40 169.5 120 70.8
SHI03897 Sapria himalayana HOM05D005595 ORTHO05D006962 3.8e-40 168.3 119 78.2
SalBow1G1604 Salvia bowleyana HOM05D005595 ORTHO05D006962 3.2e-39 165.2 142 62.0
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 7.2e-39 164.1 139 64.7
A03p32350 Brassica napus HOM05D005595 ORTHO05D006962 1.2e-38 163.3 135 65.2
C03p39400 Brassica napus HOM05D005595 ORTHO05D006962 1.2e-38 163.3 135 65.2
BraA03t12405Z Brassica rapa HOM05D005595 ORTHO05D006962 1.2e-38 163.3 135 65.2
Sp3g00270 Schrenkiella parvula HOM05D005595 ORTHO05D006962 7.9e-38 160.6 135 64.4
SEGI_06133 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 2.3e-37 159.1 121 64.5
FAN09G4421 Fragaria x ananassa HOM05D005595 ORTHO05D006962 3.3e-36 155.2 140 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3616 Anthoceros agrestis HOM05D005595 ORTHO05D006962 5.7e-36 154.5 132 60.6
SalBow7G1090 Salvia bowleyana HOM05D005595 ORTHO05D006962 5.7e-36 154.5 134 63.4
Peaxi162Scf00318g00721 Petunia axillaris HOM05D005595 ORTHO05D006962 4.8e-35 151.4 119 66.4
CiPaw.04G034600 Carya illinoinensis HOM05D005595 ORTHO05D006962 2.4e-34 149.1 111 70.3
COL.COLO4_13732 Corchorus olitorius HOM05D005595 ORTHO05D006962 4.1e-34 148.3 129 64.3
FAN14G1531 Fragaria x ananassa HOM05D005595 ORTHO05D006962 2.0e-33 146.0 112 64.3
Mapoly0030s0026 Marchantia polymorpha HOM05D005595 ORTHO05D006962 2.9e-32 142.1 115 61.7
CSS0030746 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 5.0e-32 141.4 118 63.6
SGA_v2.0_scaffold154G37161 Striga asiatica HOM05D005595 ORTHO05D006962 2.5e-31 139.0 121 62.0
Pp3c1_3220 Physcomitrium patens HOM05D005595 ORTHO05D006962 3.2e-31 138.7 128 56.2
CSS0048340 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 1.0e-29 133.7 150 52.7
CBR_g2974 Chara braunii HOM05D005595 ORTHO05D006962 1.8e-29 132.9 122 55.7
FAN12G0306 Fragaria x ananassa HOM05D005595 ORTHO05D006962 4.8e-27 124.8 158 49.4
TAR629G0540 Trochodendron aralioides HOM05D005595 ORTHO05D006962 3.0e-21 105.5 108 56.5
unitig_0.g789 Utricularia gibba HOM05D005595 ORTHO05D006962 5.2e-21 104.8 73 67.1
FAN12G0063 Fragaria x ananassa HOM05D005595 ORTHO05D006962 8.8e-21 104.0 106 55.7
Cre09.g405200 Chlamydomonas reinhardtii HOM05D005595 ORTHO05D006962 3.7e-19 98.6 126 44.4
MCO07G681 Micromonas commoda HOM05D005595 ORTHO05D006962 6.3e-19 97.8 117 43.6
SMO117G0155 Selaginella moellendorffii HOM05D005595 ORTHO05D006962 1.8e-18 96.3 128 43.0
HanXRQChr17g0550171 Helianthus annuus HOM05D005595 ORTHO05D006962 1.2e-17 93.6 123 50.4
BolC3t16209H Brassica oleracea HOM05D005595 ORTHO05D006962 1.1e-15 87.0 48 87.5
Os05g0243100 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 8.8e-13 77.4 77 53.2
PRCOL_00005998 Prasinoderma coloniale HOM05D005595 ORTHO05D006962 2.4e-10 69.3 103 40.8
AagrBONN_evm.TU.Sc2ySwM_344.5504 Anthoceros agrestis HOM05D005595 ORTHO05D006962 2.0e-09 66.2 50 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1421 Anthoceros agrestis HOM05D005595 ORTHO05D006962 1.0e-08 63.9 78 46.2
Os05g0243200 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.3e-08 63.5 37 81.1
SMO116G0167 Selaginella moellendorffii HOM05D002452 ORTHO05D006585 3.8e-08 62.0 114 33.3
Sabra17G0059400 Salix brachista HOM05D005595 ORTHO05D006962 1.5e-07 60.1 31 87.1
Sabra17G0061400 Salix brachista HOM05D005595 ORTHO05D006962 1.5e-07 60.1 31 87.1
Ciclev10021899m.g Citrus clementina HOM05D002452 ORTHO05D006585 5.5e-07 58.2 115 32.2
HanXRQChr13g0389701 Helianthus annuus HOM05D002452 ORTHO05D006585 9.4e-07 57.4 113 32.7
Oeu058458.1 Olea europaea HOM05D002452 ORTHO05D006585 1.2e-06 57.0 116 33.6
AUR62039587 Chenopodium quinoa HOM05D002452 ORTHO05D006585 2.1e-06 56.2 114 36.8
MCO07G320 Micromonas commoda HOM05D002452 ORTHO05D006585 2.1e-06 56.2 114 30.7
HanXRQChr14g0429531 Helianthus annuus HOM05D002452 ORTHO05D006585 4.7e-06 55.1 113 31.9
Lj3g0015531 Lotus japonicus HOM05D002452 ORTHO05D006585 4.7e-06 55.1 113 31.0
Haze_09242 Corylus avellana HOM05D002452 ORTHO05D006585 6.1e-06 54.7 113 31.0
Gohir.A01G048100 Gossypium hirsutum HOM05D002452 ORTHO05D006585 6.1e-06 54.7 113 31.9
Rhsim06G0211400 Rhododendron simsii HOM05D002452 ORTHO05D006585 6.1e-06 54.7 115 28.7
vmacro11967 Vaccinium macrocarpon HOM05D002452 ORTHO05D006585 6.1e-06 54.7 116 33.6
MSTRG.14251 Avicennia marina HOM05D002452 ORTHO05D006585 8.0e-06 54.3 116 32.8
CiPaw.12G110400 Carya illinoinensis HOM05D002452 ORTHO05D006585 8.0e-06 54.3 113 31.0
AUR62039507 Chenopodium quinoa HOM05D002452 ORTHO05D006585 8.0e-06 54.3 114 36.0
Nn3g21012 Nelumbo nucifera HOM05D002452 ORTHO05D006585 8.0e-06 54.3 115 31.3
Os01g0749200 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006585 8.0e-06 54.3 114 34.2
PGR083G1274 Punica granatum HOM05D002452 ORTHO05D006585 8.0e-06 54.3 115 29.6


User provided reference genes

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