Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0750 Ceratophyllum demersum HOM05D005416 ORTHO05D007956 9.1e-215 750.0 382 100.0
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 1.2e-126 457.2 490 52.2
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 1.0e-125 454.1 490 52.2
Nn3g18354 Nelumbo nucifera HOM05D005416 ORTHO05D007956 8.8e-125 451.1 491 52.7
MD13G1020900 Malus domestica HOM05D005416 ORTHO05D007956 4.1e-122 442.2 482 52.3
CiPaw.06G051400 Carya illinoinensis HOM05D005416 ORTHO05D007956 7.7e-121 438.0 477 52.0
MD16G1019300 Malus domestica HOM05D005416 ORTHO05D007956 1.0e-120 437.6 478 52.1
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 1.2e-118 430.6 481 49.7
Solyc01g005380.3 Solanum lycopersicum HOM05D005416 ORTHO05D007956 2.1e-118 429.9 478 49.6
Duzib251G0900 Durio zibethinus HOM05D005416 ORTHO05D007956 3.6e-118 429.1 478 49.8
CSS0046016 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 6.1e-118 428.3 469 52.9
THA.LOC104825565 Tarenaya hassleriana HOM05D005416 ORTHO05D007956 1.4e-117 427.2 477 49.9
GSVIVG01011666001 Vitis vinifera HOM05D005416 ORTHO05D007956 1.4e-117 427.2 466 51.9
RcHm_v2.0_Chr4g0443121 Rosa chinensis HOM05D005416 ORTHO05D007956 2.3e-117 426.4 479 50.1
Gorai.008G168000 Gossypium raimondii HOM05D005416 ORTHO05D007956 5.1e-117 425.2 480 49.4
Lj3C865G4 Lonicera japonica HOM05D005416 ORTHO05D007956 8.8e-117 424.5 476 50.4
Cpa.g.sc2.205 Carica papaya HOM05D005416 ORTHO05D007956 1.1e-116 424.1 477 48.6
FAN07G1459 Fragaria x ananassa HOM05D005416 ORTHO05D007956 1.5e-116 423.7 483 49.5
Gohir.A12G151900 Gossypium hirsutum HOM05D005416 ORTHO05D007956 2.6e-116 422.9 480 49.2
AL1G40300 Arabidopsis lyrata HOM05D005416 ORTHO05D007956 3.3e-116 422.5 478 48.3
CANSAT01G1131 Cannabis sativa HOM05D005416 ORTHO05D007956 4.4e-116 422.2 484 49.4
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 4.4e-116 422.2 482 49.2
arahy.Tifrunner.gnm1.ann1.B96KF5 Arachis hypogaea HOM05D005416 ORTHO05D007956 7.4e-116 421.4 478 49.4
CSS0013875 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 7.4e-116 421.4 467 52.5
Eucgr.B02671 Eucalyptus grandis HOM05D005416 ORTHO05D007956 1.7e-115 420.2 485 49.9
Lalb_Chr16g0387601 Lupinus albus HOM05D005416 ORTHO05D007956 1.7e-115 420.2 471 49.5
Actinidia36630 Actinidia chinensis HOM05D005416 ORTHO05D007956 8.2e-115 417.9 484 50.4
arahy.Tifrunner.gnm1.ann1.AF56D0 Arachis hypogaea HOM05D005416 ORTHO05D007956 8.2e-115 417.9 478 48.7
CARHR026460 Cardamine hirsuta HOM05D005416 ORTHO05D007956 1.1e-114 417.5 478 47.5
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 1.4e-114 417.2 487 49.1
PSO478G1161 Papaver somniferum HOM05D005416 ORTHO05D007956 2.4e-114 416.4 489 48.7
Sp1g23160 Schrenkiella parvula HOM05D005416 ORTHO05D007956 2.4e-114 416.4 455 48.4
Carub.0001s2548 Capsella rubella HOM05D005416 ORTHO05D007956 4.1e-114 415.6 457 47.5
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 7.0e-114 414.8 472 50.6
Atru.chr11.944 Acer truncatum HOM05D005416 ORTHO05D007956 9.1e-114 414.5 481 49.1
A09p39010 Brassica napus HOM05D005416 ORTHO05D007956 1.2e-113 414.1 470 47.7
Ciclev10015103m.g Citrus clementina HOM05D005416 ORTHO05D007956 2.0e-113 413.3 478 49.4
BolC5t31280H Brassica oleracea HOM05D005416 ORTHO05D007956 1.0e-112 411.0 470 47.4
BraA09t39401Z Brassica rapa HOM05D005416 ORTHO05D007956 1.0e-112 411.0 471 47.1
Thhalv10007532m.g Eutrema salsugineum HOM05D005416 ORTHO05D007956 1.0e-112 411.0 471 46.5
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 1.3e-112 410.6 477 48.0
QL03p035642 Quercus lobata HOM05D005416 ORTHO05D007956 1.3e-112 410.6 549 45.5
BcaC05g26502 Brassica carinata HOM05D005416 ORTHO05D007956 1.7e-112 410.2 469 47.5
AT1G24610 Arabidopsis thaliana HOM05D005416 ORTHO05D007956 2.2e-112 409.8 478 47.1
DCAR_030261 Daucus carota HOM05D005416 ORTHO05D007956 2.2e-112 409.8 480 47.7
Glyma.08G045400 Glycine max HOM05D005416 ORTHO05D007956 2.2e-112 409.8 478 49.4
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 6.5e-112 408.3 467 48.4
CsaV3_5G028150 Cucumis sativus L. HOM05D005416 ORTHO05D007956 8.5e-112 407.9 484 49.4
vmacro23117 Vaccinium macrocarpon HOM05D005416 ORTHO05D007956 8.5e-112 407.9 526 47.3
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 1.1e-111 407.5 463 49.5
Lsat_1_v5_gn_8_46201 Lactuca sativa HOM05D005416 ORTHO05D007956 2.5e-111 406.4 478 49.2
TWI53G1568 Tripterygium wilfordii HOM05D005416 ORTHO05D007956 5.5e-111 405.2 483 48.0
Cc11_g07140 Coffea canephora HOM05D005416 ORTHO05D007956 9.4e-111 404.4 475 48.8
Sabra08G0102700 Salix brachista HOM05D005416 ORTHO05D007956 2.1e-110 403.3 480 48.5
Aa31LG7G9430 Aethionema arabicum HOM05D005416 ORTHO05D007956 3.6e-110 402.5 472 46.8
Potri.008G134200 Populus trichocarpa HOM05D005416 ORTHO05D007956 4.7e-110 402.1 481 48.0
Medtr8g105200 Medicago truncatula HOM05D005416 ORTHO05D007956 1.0e-109 401.0 466 48.3
Oeu044016.1 Olea europaea HOM05D005416 ORTHO05D007956 1.8e-109 400.2 487 48.7
Phvul.002G320700 Phaseolus vulgaris HOM05D005416 ORTHO05D007956 2.3e-109 399.8 463 47.9
VMungo0251G2936 Vigna mungo HOM05D005416 ORTHO05D007956 3.0e-109 399.4 478 47.5
Rhsim09G0090200 Rhododendron simsii HOM05D005416 ORTHO05D007956 6.7e-109 398.3 439 51.0
AUR62014156 Chenopodium quinoa HOM05D005416 ORTHO05D007956 8.8e-109 397.9 465 48.0
ClCG01G006540 Citrullus lanatus HOM05D005416 ORTHO05D007956 1.5e-108 397.1 503 47.9
C05p25520 Brassica napus HOM05D005416 ORTHO05D007956 2.6e-108 396.4 470 46.8
Peaxi162Scf00655g00217 Petunia axillaris HOM05D005416 ORTHO05D007956 4.4e-108 395.6 484 47.5
Ca_17262_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 9.7e-108 394.4 464 48.1
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 1.3e-107 394.0 471 47.8
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 1.3e-107 394.0 480 47.5
Ca_17283_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.7e-107 393.7 466 47.9
Psat7g008160 Pisum sativum HOM05D005416 ORTHO05D007956 2.8e-107 392.9 464 47.0
AUR62038467 Chenopodium quinoa HOM05D005416 ORTHO05D007956 6.3e-107 391.7 463 46.7
Hund24928 Selenicereus undatus HOM05D005416 ORTHO05D007956 1.4e-106 390.6 482 46.1
Lj4g0002826 Lotus japonicus HOM05D005416 ORTHO05D007956 1.8e-106 390.2 480 46.9
FAN17G2258 Fragaria x ananassa HOM05D005416 ORTHO05D007956 1.2e-105 387.5 498 45.6
SalBow2G1542 Salvia bowleyana HOM05D005416 ORTHO05D007956 1.6e-105 387.1 468 47.4
SGA_v2.0_scaffold139G35433 Striga asiatica HOM05D005416 ORTHO05D007956 8.5e-104 381.3 486 45.7
Aqoxy3G00017 Aquilegia oxysepala HOM05D005416 ORTHO05D007956 9.4e-103 377.9 492 45.3
ATR0753G010 Amborella trichopoda HOM05D005416 ORTHO05D007956 2.1e-102 376.7 457 47.0
COL.COLO4_16581 Corchorus olitorius HOM05D005416 ORTHO05D007956 2.3e-101 373.2 482 44.8
FAN12G4277 Fragaria x ananassa HOM05D005416 ORTHO05D007956 2.2e-99 366.7 428 48.1
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 6.5e-96 355.1 447 45.4
Os02g0733800 Oryza sativa ssp. japonica HOM05D005416 ORTHO05D007956 6.1e-94 348.6 439 44.9
SEGI_37558 Sequoiadendron giganteum HOM05D005416 ORTHO05D007956 1.4e-93 347.4 446 42.6
Ah.03g137430 Amaranthus hybridus HOM05D005416 ORTHO05D007956 5.2e-93 345.5 448 44.2
unitig_62.g23745 Utricularia gibba HOM05D005416 ORTHO05D007956 7.0e-90 335.1 440 44.3
Haze_10889 Corylus avellana HOM05D005416 ORTHO05D007956 1.6e-89 334.0 367 51.0
MELO3C005273.2 Cucumis melo HOM05D005416 ORTHO05D007956 2.0e-89 333.6 422 47.6
Manes.15G133800 Manihot esculenta HOM05D005416 ORTHO05D007956 1.9e-87 327.0 365 50.4
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 9.5e-87 324.7 381 45.1
Dinv07734 Davidia involucrata HOM05D005416 ORTHO05D007956 4.7e-86 322.4 357 51.5
Sed0000743 Sechium edule HOM05D005416 ORTHO05D007956 1.4e-85 320.9 366 50.0
Gohir.D12G155501 Gossypium hirsutum HOM05D005416 ORTHO05D007956 3.0e-85 319.7 357 50.1
A09p38980 Brassica napus HOM05D005416 ORTHO05D007956 1.5e-84 317.4 453 39.7
Prupe.1G332800 Prunus persica HOM05D005416 ORTHO05D007956 1.5e-84 317.4 357 51.0
FvH4_4g33660 Fragaria vesca HOM05D005416 ORTHO05D007956 2.0e-84 317.0 364 49.5
Sc14g0006920 Simmondsia chinensis HOM05D005416 ORTHO05D007956 8.3e-83 311.6 356 50.3
HPP92_009635 Vanilla planifolia HOM05D005416 ORTHO05D007956 2.9e-80 303.1 379 44.6
Glyma.05G238300 Glycine max HOM05D005416 ORTHO05D007956 3.9e-80 302.8 355 48.2
Thecc.02G292000 Theobroma cacao HOM05D005416 ORTHO05D007956 5.2e-77 292.4 361 43.8
Mapoly0108s0064 Marchantia polymorpha HOM05D005416 ORTHO05D007956 7.3e-71 271.9 447 37.4
TPR.G27727 Trifolium pratense HOM05D005416 ORTHO05D007956 1.2e-70 271.2 210 65.2
EL10Ac6g14151 Beta vulgaris HOM05D005416 ORTHO05D007956 4.0e-69 266.2 352 42.9
Eucgr.B02669 Eucalyptus grandis HOM05D005416 ORTHO05D007956 7.5e-68 261.9 213 63.8
Actinidia12391 Actinidia chinensis HOM05D005416 ORTHO05D007956 1.0e-64 251.5 203 66.0
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 6.6e-64 248.8 433 36.0
A09p38990 Brassica napus HOM05D005416 ORTHO05D007956 8.6e-64 248.4 205 60.5
Lalb_Chr05g0222251 Lupinus albus HOM05D005416 ORTHO05D007956 3.1e-61 240.0 196 62.2
Pp3c1_8530 Physcomitrium patens HOM05D005416 ORTHO05D007956 3.9e-56 223.0 422 35.5
Lalb_Chr05g0222241 Lupinus albus HOM05D005416 ORTHO05D007956 1.4e-45 188.0 162 54.9
AagrBONN_evm.TU.Sc2ySwM_368.2630 Anthoceros agrestis HOM05D005416 ORTHO05D007956 4.3e-39 166.4 218 44.0
Cre12.g541777 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D007956 3.9e-32 143.3 451 25.9
PRCOL_00006542 Prasinoderma coloniale HOM05D005416 ORTHO05D007956 2.5e-31 140.6 430 29.1
MCO10G176 Micromonas commoda HOM05D005416 ORTHO05D007956 4.5e-28 129.8 461 27.8
TPR.G27724 Trifolium pratense HOM05D005416 ORTHO05D007956 1.3e-24 118.2 122 52.5
VMungo0720G2620 Vigna mungo HOM05D005416 ORTHO05D007956 1.9e-23 114.4 88 62.5
Haze_10888 Corylus avellana HOM05D005416 ORTHO05D026383 5.9e-20 102.8 105 51.4
BcaC05g26504 Brassica carinata HOM05D005416 ORTHO05D039779 1.2e-12 78.6 52 65.4
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 2.0e-12 77.8 59 61.0
CDE11G0518 Ceratophyllum demersum HOM05D005416 ORTHO05D129319 3.4e-12 77.0 44 86.4
C05p25540 Brassica napus HOM05D005416 ORTHO05D039779 3.8e-11 73.6 52 61.5
Actinidia12392 Actinidia chinensis HOM05D005416 ORTHO05D026383 3.2e-10 70.5 126 41.3
FAN22G0290 Fragaria x ananassa HOM05D005416 ORTHO05D026383 4.2e-10 70.1 82 47.6
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.4e-08 65.1 196 24.0
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.8e-08 64.7 196 24.0
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05D005456 ORTHO05D006805 1.7e-06 58.2 164 28.0


User provided reference genes

Program Settings