Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.1e-95 353.2 176 100.0
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.7e-81 304.7 168 92.3
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.7e-54 215.3 177 63.3
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 4.9e-54 214.9 176 64.2
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 4.9e-54 214.9 176 64.2
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 6.4e-54 214.5 177 62.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.1e-53 211.8 182 61.0
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 9.2e-53 210.7 176 62.5
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 2.0e-52 209.5 182 63.2
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.7e-52 209.1 177 62.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.7e-52 209.1 177 63.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.7e-52 209.1 177 63.3
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 5.9e-52 208.0 180 59.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.9e-52 208.0 179 61.5
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 1.0e-51 207.2 181 64.1
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 3.0e-51 205.7 178 64.0
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.6e-51 204.5 178 61.8
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.6e-51 204.5 179 62.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.1e-50 203.8 178 62.4
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.1e-50 203.8 177 61.6
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.9e-50 203.0 177 62.7
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.9e-50 203.0 177 61.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 2.5e-50 202.6 184 57.6
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 4.3e-50 201.8 184 59.2
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 4.3e-50 201.8 183 64.5
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 7.3e-50 201.1 181 59.7
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 9.5e-50 200.7 178 57.3
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.2e-49 200.3 184 62.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.6e-49 199.9 181 60.8
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.6e-49 199.9 181 60.8
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 2.1e-49 199.5 178 59.6
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 4.7e-49 198.4 178 61.8
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 6.2e-49 198.0 179 62.6
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 8.0e-49 197.6 178 57.9
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 1.1e-48 197.2 185 60.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.1e-48 197.2 177 59.9
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.4e-48 196.8 162 62.3
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 1.8e-48 196.4 182 58.8
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 2.3e-48 196.1 178 60.1
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 3.1e-48 195.7 179 59.2
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.1e-48 195.7 168 60.1
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 3.1e-48 195.7 178 58.4
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 3.1e-48 195.7 183 58.5
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 4.0e-48 195.3 178 60.7
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 5.2e-48 194.9 186 57.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 6.8e-48 194.5 175 58.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 8.9e-48 194.1 166 60.2
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.2e-47 193.7 181 58.6
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.5e-47 193.4 171 59.6
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.5e-47 193.4 182 56.0
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.0e-47 193.0 173 59.0
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.6e-47 192.6 148 66.9
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.6e-47 192.6 177 59.9
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 9.8e-47 190.7 188 56.4
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 9.8e-47 190.7 180 57.2
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.3e-46 190.3 185 56.8
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.7e-46 189.9 114 77.2
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.7e-46 189.9 182 57.1
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 2.2e-46 189.5 131 69.5
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.9e-46 189.1 164 59.8
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 2.9e-46 189.1 182 57.1
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.9e-46 189.1 164 59.8
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 3.7e-46 188.7 146 62.3
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 4.9e-46 188.3 176 60.2
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 4.9e-46 188.3 181 56.4
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 6.4e-46 188.0 121 71.9
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 6.4e-46 188.0 181 57.5
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 6.4e-46 188.0 177 59.3
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.4e-45 186.8 167 57.5
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.9e-45 186.4 177 56.5
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.9e-45 186.4 177 59.3
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.4e-45 186.0 181 56.4
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.2e-45 185.7 219 50.7
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 4.1e-45 185.3 125 71.2
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 4.1e-45 185.3 184 54.9
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.1e-45 185.3 174 55.7
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.4e-45 184.9 179 56.4
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.4e-45 184.9 179 57.0
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 5.4e-45 184.9 179 58.1
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 5.4e-45 184.9 180 55.0
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 7.0e-45 184.5 176 58.0
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 9.2e-45 184.1 178 54.5
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-44 183.7 174 55.7
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-44 183.7 183 56.3
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.2e-44 183.7 174 55.7
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.6e-44 183.3 179 54.7
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.6e-44 183.3 169 58.6
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.0e-44 183.0 184 54.3
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 2.0e-44 183.0 176 56.8
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 2.0e-44 183.0 178 55.1
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 3.5e-44 182.2 174 54.0
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 4.6e-44 181.8 183 56.8
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 4.6e-44 181.8 174 55.2
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 4.6e-44 181.8 166 55.4
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 4.6e-44 181.8 174 55.2
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 4.6e-44 181.8 174 55.2
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 4.6e-44 181.8 166 55.4
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 7.8e-44 181.0 177 55.9
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 7.8e-44 181.0 139 64.7
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 7.8e-44 181.0 180 55.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.7e-43 179.9 194 54.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.3e-43 179.5 159 56.0
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.3e-43 179.5 161 55.9
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 2.3e-43 179.5 160 55.6
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 3.9e-43 178.7 182 53.3
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.9e-43 178.7 184 54.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 5.0e-43 178.3 147 58.5
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.1e-42 177.2 172 52.3
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 3.3e-42 175.6 164 54.3
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 1.6e-41 173.3 177 53.1
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 2.1e-41 172.9 142 59.2
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 6.2e-41 171.4 190 52.1
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.1e-40 170.6 124 65.3
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.4e-40 170.2 113 73.5
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.8e-40 169.9 149 62.4
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-39 166.0 178 52.2
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.9e-37 159.8 116 65.5
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 5.4e-37 158.3 148 56.1
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 6.0e-36 154.8 122 59.0
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 6.0e-36 154.8 294 35.7
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.7e-35 153.3 294 35.4
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 3.3e-34 149.1 183 50.3
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 2.6e-31 139.4 137 51.1
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.7e-30 136.7 213 42.7
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.9e-30 136.0 149 49.0
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.9e-29 133.3 108 55.6
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.1e-28 129.8 87 71.3
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 7.8e-28 127.9 82 74.4
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 7.8e-28 127.9 87 70.1
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.3e-27 127.1 82 74.4
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 3.9e-27 125.6 97 58.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.7e-27 124.4 87 65.5
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-26 123.2 87 66.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 2.1e-25 119.8 87 65.5
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 4.0e-24 115.5 82 69.5
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 5.2e-24 115.2 87 66.7
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.4e-13 80.5 54 68.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 8.7e-11 71.2 54 63.0
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.6e-10 67.8 93 44.1
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 2.1e-09 66.6 63 42.9
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.1e-08 62.8 74 45.9
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.4e-07 59.3 75 42.7
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 9.9e-07 57.8 43 67.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.3e-06 57.4 79 41.8
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.2e-06 56.6 74 45.9


User provided reference genes

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