Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 6.9e-131 470.7 248 100.0
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.4e-120 436.4 248 94.4
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 3.8e-44 182.6 232 49.6
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 3.8e-44 182.6 240 48.3
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 7.1e-43 178.3 240 46.2
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 2.1e-42 176.8 251 46.2
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 6.0e-42 175.3 252 47.6
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 7.9e-42 174.9 255 44.7
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 2.3e-41 173.3 254 43.3
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.1e-40 171.0 255 45.1
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.6e-39 167.2 227 47.1
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.1e-39 166.8 227 46.7
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 3.7e-39 166.0 229 40.6
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 5.3e-38 162.2 260 40.8
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 9.0e-38 161.4 250 43.6
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 2.0e-37 160.2 254 43.3
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 9.9e-37 157.9 254 40.2
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 2.2e-36 156.8 231 44.6
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 3.8e-36 156.0 231 44.6
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 4.9e-36 155.6 232 44.0
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 6.4e-36 155.2 220 43.2
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 8.4e-36 154.8 245 42.9
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 8.4e-36 154.8 240 44.2
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.1e-35 154.5 225 40.4
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 1.4e-35 154.1 247 39.3
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.9e-35 153.7 237 42.6
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.9e-35 153.7 250 43.2
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.5e-35 153.3 239 41.8
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 2.5e-35 153.3 241 42.7
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 2.5e-35 153.3 222 45.0
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 5.5e-35 152.1 247 39.3
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 7.1e-35 151.8 240 43.3
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 9.3e-35 151.4 213 44.1
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 9.3e-35 151.4 245 40.4
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 9.3e-35 151.4 231 43.7
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 1.6e-34 150.6 215 45.6
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.6e-34 150.6 258 41.9
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 4.6e-34 149.1 248 40.7
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 4.6e-34 149.1 218 46.8
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 7.9e-34 148.3 244 41.8
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.0e-33 147.9 238 42.9
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 1.3e-33 147.5 240 41.7
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.3e-33 147.5 222 44.1
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 2.3e-33 146.7 250 42.4
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.3e-33 146.7 240 42.5
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.0e-33 146.4 258 40.3
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 3.0e-33 146.4 223 42.2
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 3.0e-33 146.4 240 40.8
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 3.9e-33 146.0 223 43.5
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.9e-33 146.0 218 45.0
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 5.1e-33 145.6 238 40.3
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 6.7e-33 145.2 219 45.2
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 8.7e-33 144.8 214 43.5
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 8.7e-33 144.8 210 42.9
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.1e-32 144.4 223 44.8
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.1e-32 144.4 234 38.5
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.5e-32 144.1 257 39.3
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 1.5e-32 144.1 222 44.6
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.5e-32 143.3 252 38.9
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 3.3e-32 142.9 245 41.6
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 4.3e-32 142.5 239 42.7
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 4.3e-32 142.5 212 44.8
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 4.3e-32 142.5 220 43.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 7.4e-32 141.7 216 42.1
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.3e-31 141.0 209 43.1
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 2.1e-31 140.2 223 42.2
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.8e-31 139.8 247 38.9
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.7e-31 139.4 195 45.1
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 4.8e-31 139.0 210 43.8
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 8.2e-31 138.3 246 37.0
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.1e-30 137.9 225 39.6
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 1.4e-30 137.5 229 38.9
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.4e-30 137.5 235 40.0
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.4e-30 137.5 229 41.5
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 5.3e-30 135.6 226 39.8
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 9.0e-30 134.8 216 37.5
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 1.5e-29 134.0 223 37.7
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.6e-29 133.3 191 41.9
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 7.6e-29 131.7 226 38.9
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 1.0e-28 131.3 229 38.4
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.3e-28 131.0 233 39.5
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.3e-28 131.0 237 39.2
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 1.7e-28 130.6 238 39.5
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.7e-28 130.6 237 38.4
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 4.9e-28 129.0 209 37.8
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 6.5e-28 128.6 238 37.4
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 8.4e-28 128.3 235 34.9
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.4e-27 127.5 238 37.0
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.5e-27 126.7 257 35.0
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 4.2e-27 125.9 255 36.5
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 7.1e-27 125.2 220 36.8
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 9.3e-27 124.8 219 40.6
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 9.3e-27 124.8 248 36.3
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 2.7e-26 123.2 217 38.7
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.8e-25 120.6 221 38.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.0e-25 119.8 247 38.1
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 3.9e-25 119.4 228 36.4
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 5.1e-25 119.0 223 36.8
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 8.7e-25 118.2 225 36.0
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 4.3e-24 115.9 214 36.9
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 5.7e-24 115.5 233 34.3
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 9.7e-24 114.8 232 37.9
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 9.7e-24 114.8 208 39.4
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 2.2e-23 113.6 216 34.7
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 6.3e-23 112.1 127 54.3
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 2.0e-21 107.1 203 36.0
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.4e-21 106.3 198 39.4
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 4.2e-19 99.4 234 33.8
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 5.5e-19 99.0 245 31.4
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.2e-18 97.8 243 32.5
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.7e-18 96.7 213 33.8
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 4.6e-18 95.9 219 34.7
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.4e-17 94.4 212 31.1
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 3.3e-16 89.7 240 30.8
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 3.3e-16 89.7 231 33.3
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 4.3e-16 89.4 240 32.1
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 5.7e-16 89.0 243 32.1
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 5.7e-16 89.0 223 32.3
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-15 87.8 219 32.4
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.3e-15 87.8 242 30.6
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.3e-15 87.8 239 31.4
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 1.3e-15 87.8 213 33.8
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 1.7e-15 87.4 242 30.6
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 4.8e-15 85.9 208 32.2
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 6.3e-15 85.5 235 31.1
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 8.2e-15 85.1 235 31.1
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.8e-14 84.0 211 31.3
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 2.4e-14 83.6 235 30.6
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 5.3e-14 82.4 223 30.9
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 5.3e-14 82.4 221 32.1
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 5.3e-14 82.4 238 31.1
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-13 80.5 233 30.5
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 2.0e-13 80.5 244 29.9
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.6e-13 80.1 76 55.3
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.0e-12 78.2 247 29.1
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.9e-12 76.6 220 30.5
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.9e-12 76.6 188 30.3
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 3.8e-12 76.3 233 30.0
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 3.8e-12 76.3 233 30.0
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 3.8e-12 76.3 233 30.0
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 5.0e-12 75.9 92 48.9
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 5.0e-12 75.9 196 29.6
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 2.5e-11 73.6 92 48.9
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.2e-11 73.2 103 41.7
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 2.7e-10 70.1 106 38.7
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 4.7e-10 69.3 146 34.9
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 7.9e-10 68.6 92 40.2
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 3.3e-08 63.2 220 28.6
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 3.3e-08 63.2 131 34.4
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 1.7e-07 60.8 114 36.0
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 1.8e-06 57.4 92 42.4
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 1.8e-06 57.4 92 42.4
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.8e-06 57.4 122 34.4
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 5.3e-06 55.8 71 46.5


User provided reference genes

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