Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.7e-153 545.0 316 100.0
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.2e-141 504.2 316 85.4
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.1e-91 339.3 324 57.7
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.2e-91 338.6 273 64.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 8.9e-91 337.8 294 60.9
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.0e-90 336.7 309 59.9
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.6e-90 336.3 306 60.1
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 3.8e-89 332.4 286 59.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 8.4e-89 331.3 290 62.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.1e-88 330.9 275 64.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.4e-88 329.7 290 63.1
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.2e-88 329.3 294 61.6
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.2e-88 329.3 323 56.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.2e-88 328.9 298 59.4
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 5.4e-88 328.6 290 63.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 2.7e-87 326.2 310 57.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.5e-87 325.9 304 57.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 6.0e-87 325.1 290 61.4
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.3e-86 323.9 293 61.8
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.7e-86 323.6 310 58.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.0e-86 322.8 285 61.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.9e-86 322.4 316 57.3
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.9e-86 322.4 316 57.0
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.9e-86 322.4 316 57.3
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 6.6e-86 321.6 274 64.2
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 8.7e-86 321.2 290 62.1
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.1e-85 320.9 283 60.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.1e-85 320.9 221 71.9
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 7.3e-85 318.2 310 58.1
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 9.6e-85 317.8 315 57.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.3e-84 317.4 308 56.5
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.6e-84 317.0 310 57.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.6e-84 317.0 295 60.7
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.1e-84 316.6 286 62.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.8e-84 316.2 299 61.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 4.8e-84 315.5 298 59.7
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 8.1e-84 314.7 294 63.9
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.8e-83 313.5 312 55.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.8e-83 313.5 216 70.8
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 3.1e-83 312.8 267 69.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.1e-83 312.8 295 56.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 4.0e-83 312.4 309 63.1
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.0e-83 312.4 290 62.1
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 6.9e-83 311.6 273 65.2
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-82 310.8 206 72.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.2e-82 310.8 290 57.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.2e-82 310.8 277 61.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.5e-82 310.5 302 57.3
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.0e-82 310.1 206 71.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.6e-82 309.7 274 60.2
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 4.4e-82 308.9 266 61.3
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.3e-81 307.4 279 66.7
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.3e-81 307.4 214 70.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.7e-81 307.0 222 68.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.7e-81 307.0 309 53.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.9e-81 306.2 280 58.6
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 4.9e-81 305.4 268 58.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 4.9e-81 305.4 291 65.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 4.9e-81 305.4 213 70.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 8.4e-81 304.7 290 56.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.1e-80 304.3 210 70.5
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-80 304.3 277 58.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 9.3e-80 301.2 296 65.9
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.2e-79 300.8 294 55.8
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.6e-79 300.4 268 68.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 2.1e-79 300.1 284 54.9
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.5e-79 299.3 315 53.0
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 3.5e-79 299.3 298 56.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 3.5e-79 299.3 301 61.8
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.3e-78 297.4 292 57.5
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.7e-78 297.0 300 64.3
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.3e-78 296.6 303 61.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.0e-78 296.2 237 65.0
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.1e-78 295.4 350 49.4
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 8.7e-78 294.7 289 57.1
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.1e-77 294.3 272 60.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.3e-77 292.7 272 66.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.3e-77 292.7 272 66.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.3e-76 290.8 273 59.3
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 3.6e-76 289.3 211 66.4
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.8e-76 288.9 190 70.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.1e-75 287.7 299 56.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.1e-75 287.7 272 65.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-75 287.3 196 68.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.1e-75 286.2 210 63.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.1e-75 286.2 283 53.7
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.9e-75 285.0 272 65.1
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-74 284.3 199 66.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.2e-74 284.3 286 57.0
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.6e-74 283.1 199 66.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 5.8e-74 282.0 261 57.9
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.8e-74 282.0 231 61.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 7.6e-74 281.6 277 55.6
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 9.9e-74 281.2 290 55.9
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.7e-73 280.4 271 56.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 3.8e-73 279.3 295 56.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 8.4e-73 278.1 271 59.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 8.4e-73 278.1 271 59.4
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-72 277.7 295 56.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.1e-72 277.7 295 56.6
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 5.4e-72 275.4 258 58.1
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.5e-71 272.7 301 51.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 8.7e-70 268.1 281 60.9
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 8.1e-68 261.5 162 74.1
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.1e-68 261.5 256 55.9
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 6.0e-63 245.4 233 53.6
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.8e-62 243.8 260 52.3
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 2.3e-62 243.4 295 49.2
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.9e-62 242.7 161 68.9
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.3e-61 239.6 275 50.9
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.1e-56 224.6 196 54.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.2e-56 223.0 135 79.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 7.9e-55 218.4 263 46.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.7e-54 215.3 204 51.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.6e-47 194.1 283 40.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.7e-46 188.7 152 63.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 8.8e-46 188.3 124 68.5
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.3e-44 184.5 265 44.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.5e-37 161.0 204 41.2
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.6e-37 160.2 177 44.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 8.2e-36 155.2 286 40.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.1e-35 153.3 100 74.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.1e-35 153.3 102 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.3e-33 147.9 259 37.1
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.6e-31 139.8 171 50.3
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-24 116.7 211 29.9
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.1e-23 114.0 75 72.0
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 3.0e-22 110.2 196 32.7
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.0e-19 99.0 361 26.3
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 6.1e-15 85.9 170 41.2
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 7.5e-13 79.0 130 42.3
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.2e-12 77.4 186 29.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.5e-10 70.1 184 27.2
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 3.5e-10 70.1 199 28.1
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.0e-09 68.6 48 68.8
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 5.6e-08 62.8 98 29.6
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 7.2e-08 62.4 55 58.2
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 1.0e-06 58.5 158 24.1


User provided reference genes

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