Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1657.5 844 100.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1446.8 846 85.5
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1208.7 847 73.6
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 842 73.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 851 72.3
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 848 71.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 847 72.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 844 71.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 856 71.3
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 835 71.5
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 840 72.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 829 72.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 857 70.7
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1165.2 853 70.5
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1165.2 848 70.3
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 862 70.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 852 70.2
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 829 70.9
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 863 69.3
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1155.2 868 69.7
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1154.4 849 70.6
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 838 70.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 843 69.8
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 862 70.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 830 70.8
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 842 70.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 841 69.9
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 846 69.5
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 864 69.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 866 67.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 829 70.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1141.3 866 67.6
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1140.9 868 69.0
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1137.9 829 69.8
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 827 70.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1135.2 860 67.7
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1135.2 853 68.8
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 857 67.0
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 886 67.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1132.5 860 68.1
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1132.1 867 69.0
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 845 69.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 857 68.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 856 68.7
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1129.8 868 68.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1129.8 918 64.7
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1128.6 866 68.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1126.7 848 69.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 880 67.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 918 65.6
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 854 68.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 865 67.9
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 884 67.0
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1120.5 863 67.3
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 875 66.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1118.2 874 66.5
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1117.1 886 66.0
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 876 66.9
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 894 65.2
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 805 72.3
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1112.4 865 66.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1111.3 870 67.1
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1111.3 894 65.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 867 67.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1109.0 894 65.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 872 66.1
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 839 67.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1107.8 850 67.6
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1107.0 873 66.6
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1106.7 909 64.9
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1106.3 830 69.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1105.9 898 65.5
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1105.1 864 66.6
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1103.6 873 65.9
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1102.8 883 66.1
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1102.4 876 66.4
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 896 65.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1101.3 863 66.6
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1098.6 923 64.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1097.8 816 68.3
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1096.3 866 67.2
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1095.9 877 66.5
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 837 68.8
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1092.4 920 63.0
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 892 65.0
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1090.9 877 65.9
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1086.6 864 67.9
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1086.2 900 64.6
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1083.9 820 68.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1083.6 881 63.7
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1079.3 873 65.6
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1078.9 884 65.3
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1078.5 899 64.6
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1075.1 884 65.3
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.9e-311 1071.6 899 64.4
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.9e-311 1070.5 899 64.3
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.2e-309 1065.4 940 61.3
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 6.3e-309 1063.9 944 62.8
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.0e-306 1056.6 888 65.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 1.3e-306 1056.2 809 67.9
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 5.5e-305 1050.8 895 61.6
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 2.1e-304 1048.9 902 63.1
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 4.7e-304 1047.7 1004 57.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.4e-303 1046.2 902 62.7
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 5.7e-302 1040.8 890 63.3
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 4.8e-301 1037.7 850 64.9
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.4e-300 1036.2 836 65.6
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 4.5e-299 1031.2 840 63.3
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-288 996.5 815 62.5
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.7e-285 986.1 732 67.5
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 5.9e-283 977.6 844 62.0
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 9.8e-270 933.7 831 57.5
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 2.1e-264 916.0 713 65.8
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 8.1e-264 914.1 891 58.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 4.1e-260 901.7 696 69.1
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.0e-258 897.1 700 64.9
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.3e-250 869.4 589 71.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 9.6e-249 864.0 720 65.1
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 8.1e-248 860.9 829 56.0
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.1e-247 860.5 870 53.8
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.7e-245 853.2 848 57.5
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.1e-243 846.3 503 80.1
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 5.6e-241 838.2 954 52.3
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.5e-228 795.0 684 62.9
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.4e-183 646.7 618 58.7
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 5.4e-167 592.4 518 64.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.7e-166 590.1 372 76.1
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-161 573.9 382 71.5
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.8e-158 562.0 339 77.3
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.3e-156 555.4 350 76.6
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.9e-152 542.7 359 71.9
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.3e-146 523.9 471 60.1
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.1e-139 498.8 532 56.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.9e-136 490.3 721 42.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 5.3e-130 469.5 837 36.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 3.0e-125 453.8 986 35.1
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.7e-120 438.0 305 70.2
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.7e-102 377.5 481 49.5
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 8.7e-101 372.5 292 64.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.7e-94 350.9 446 51.1
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 8.8e-93 345.9 1019 29.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.1e-84 318.9 584 38.0
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.0e-77 293.9 325 57.2
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.8e-67 261.2 165 77.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.4e-45 189.1 327 39.1
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 3.7e-43 181.0 122 82.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 8.6e-40 169.9 102 79.4
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.2e-35 155.2 106 67.0
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.6e-33 149.1 108 69.4
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.0e-32 146.4 105 69.5
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 5.8e-20 104.0 78 66.7
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 5.8e-20 104.0 76 65.8
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-18 99.8 61 77.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-13 81.6 89 48.3
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.4e-12 78.2 57 64.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 7.6e-12 77.0 62 59.7
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-11 75.9 45 77.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.6e-09 69.3 40 87.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.3e-08 65.5 56 57.1
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.7e-08 63.9 99 45.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.9e-07 62.4 41 65.9
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 9.6e-07 60.1 52 55.8
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.1e-06 58.9 65 43.1
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.1e-06 57.0 47 59.6


User provided reference genes

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