Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.7e-31 138.7 67 100.0
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 9.6e-19 96.3 65 69.2
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.6e-18 95.5 61 72.1
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-18 95.5 63 68.3
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.6e-18 95.5 66 69.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 8.1e-18 93.2 61 68.9
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 8.1e-18 93.2 63 66.7
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 8.1e-18 93.2 63 66.7
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.1e-17 92.8 61 72.1
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.1e-17 92.8 61 68.9
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.1e-17 92.8 61 68.9
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-17 92.4 61 70.5
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-17 92.4 61 70.5
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.4e-17 91.7 65 66.2
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 2.4e-17 91.7 65 67.7
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 3.1e-17 91.3 61 68.9
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 4.0e-17 90.9 58 72.4
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 4.0e-17 90.9 60 71.7
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 4.0e-17 90.9 61 70.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 4.0e-17 90.9 60 70.0
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 5.3e-17 90.5 61 67.2
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 6.9e-17 90.1 58 72.4
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 9.0e-17 89.7 58 72.4
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.2e-16 89.4 61 68.9
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.2e-16 89.4 61 72.1
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.5e-16 89.0 63 65.1
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 2.0e-16 88.6 61 67.2
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 2.0e-16 88.6 58 69.0
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 2.0e-16 88.6 61 63.9
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 2.0e-16 88.6 61 65.6
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.0e-16 88.6 65 61.5
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.0e-16 88.6 58 70.7
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 3.4e-16 87.8 61 63.9
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 4.5e-16 87.4 61 67.2
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 4.5e-16 87.4 60 66.7
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.5e-16 87.4 60 66.7
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.5e-16 87.4 57 70.2
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.5e-16 87.4 60 70.0
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 4.5e-16 87.4 61 65.6
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 5.8e-16 87.0 58 70.7
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 7.6e-16 86.7 60 66.7
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 7.6e-16 86.7 63 65.1
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 9.9e-16 86.3 64 64.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.3e-15 85.9 64 62.5
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.3e-15 85.9 64 62.5
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.3e-15 85.9 64 62.5
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.7e-15 85.5 59 66.1
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 2.9e-15 84.7 65 56.9
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 2.9e-15 84.7 61 65.6
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 2.9e-15 84.7 65 61.5
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.9e-15 84.7 63 60.3
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.9e-15 84.7 58 65.5
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 3.8e-15 84.3 65 60.0
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.8e-15 84.3 60 66.7
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 3.8e-15 84.3 65 60.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 4.9e-15 84.0 65 61.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.4e-15 83.6 58 67.2
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 6.4e-15 83.6 58 67.2
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 6.4e-15 83.6 63 60.3
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 6.4e-15 83.6 63 60.3
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 8.4e-15 83.2 65 60.0
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 8.4e-15 83.2 65 60.0
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 1.1e-14 82.8 62 61.3
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.1e-14 82.8 65 60.0
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.9e-14 82.0 58 65.5
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.9e-14 82.0 61 62.3
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.9e-14 82.0 60 63.3
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.2e-14 81.3 66 57.6
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.2e-14 80.9 63 58.7
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 4.2e-14 80.9 64 59.4
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 5.5e-14 80.5 62 59.7
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 5.5e-14 80.5 64 60.9
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 7.1e-14 80.1 63 57.1
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 7.1e-14 80.1 58 63.8
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-13 79.0 57 64.9
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 2.1e-13 78.6 66 56.1
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 2.7e-13 78.2 59 59.3
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.7e-13 78.2 63 55.6
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 3.5e-13 77.8 60 60.0
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 4.6e-13 77.4 63 57.1
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 6.0e-13 77.0 59 57.6
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 1.3e-12 75.9 65 58.5
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.3e-12 75.9 67 53.7
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.8e-12 75.5 66 54.5
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.3e-12 75.1 60 58.3
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.3e-12 75.1 60 58.3
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 2.3e-12 75.1 60 58.3
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 3.9e-12 74.3 66 54.5
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 3.9e-12 74.3 57 59.6
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 6.7e-12 73.6 66 53.0
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.8e-10 68.2 55 58.2
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 2.8e-10 68.2 60 55.0
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.1e-09 66.2 47 61.7
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 2.4e-09 65.1 67 46.3
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.1e-09 64.7 55 56.4
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.9e-09 63.5 47 61.7
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.4e-06 55.8 65 36.9
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 7.1e-06 53.5 65 35.4


User provided reference genes

Program Settings