Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.3e-167 593.2 348 100.0
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 8.0e-101 371.3 333 57.4
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 7.5e-99 364.8 333 64.3
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.9e-94 350.1 337 65.0
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.8e-93 346.3 334 56.9
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 8.1e-93 344.7 331 53.2
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.8e-92 343.6 330 55.5
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.5e-91 340.5 334 64.7
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 7.5e-91 338.2 332 60.8
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.3e-90 337.4 325 54.2
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 1.3e-90 337.4 335 63.6
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 4.9e-90 335.5 334 52.1
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 4.9e-90 335.5 334 52.1
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 3.2e-89 332.8 337 51.3
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 9.2e-89 331.3 334 49.7
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.6e-88 330.5 331 63.4
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 3.5e-88 329.3 330 62.7
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 4.6e-88 328.9 315 63.2
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 6.0e-88 328.6 334 50.6
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 6.0e-88 328.6 304 52.6
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 7.8e-88 328.2 332 49.7
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.3e-87 327.4 334 50.3
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.0e-87 326.2 343 57.4
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.0e-87 326.2 332 49.4
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 6.6e-87 325.1 332 49.1
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.1e-86 324.3 334 50.0
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 4.3e-86 322.4 322 63.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 4.3e-86 322.4 322 61.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 7.3e-86 321.6 327 60.9
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 7.3e-86 321.6 334 49.1
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 3.6e-85 319.3 327 56.9
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 6.2e-85 318.5 336 49.4
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.1e-84 317.8 291 66.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.8e-84 317.0 326 50.0
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.8e-84 317.0 334 51.2
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 6.8e-84 315.1 337 50.7
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 3.4e-83 312.8 334 56.3
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.3e-82 310.8 318 63.5
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 6.4e-82 308.5 334 49.1
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.4e-81 307.4 334 54.8
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 6.0e-80 302.0 301 61.1
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 3.0e-79 299.7 334 53.9
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.1e-78 297.7 323 50.2
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.9e-78 297.0 398 43.2
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 5.6e-78 295.4 334 54.5
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.6e-77 292.7 362 43.1
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 1.4e-76 290.8 334 56.0
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 2.4e-76 290.0 356 45.8
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.4e-76 290.0 335 45.7
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.0e-76 289.3 334 54.8
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.8e-76 288.5 334 47.0
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.2e-75 287.7 336 46.4
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.5e-75 287.3 334 53.3
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.6e-75 286.6 326 47.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 7.6e-75 285.0 347 55.9
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 7.6e-75 285.0 334 53.3
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 9.9e-75 284.6 333 58.6
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 2.2e-74 283.5 331 57.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 8.4e-74 281.6 333 58.0
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 3.2e-73 279.6 334 58.1
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 7.1e-73 278.5 333 56.8
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.1e-72 276.9 334 49.7
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 1.0e-71 274.6 333 58.3
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.3e-71 273.5 332 43.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 6.6e-71 271.9 320 55.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.9e-70 270.4 327 55.4
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.1e-69 266.9 304 47.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.8e-69 266.5 328 57.6
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 4.8e-69 265.8 335 48.7
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 6.2e-69 265.4 322 51.6
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 1.4e-68 264.2 356 43.3
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 5.3e-68 262.3 328 57.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 9.0e-68 261.5 302 54.0
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 4.4e-67 259.2 330 52.4
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.3e-66 257.7 330 49.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 3.8e-66 256.1 327 56.9
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.9e-65 253.8 327 54.4
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 7.1e-65 251.9 271 60.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.1e-65 251.9 326 52.5
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 9.3e-65 251.5 326 53.7
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.6e-64 250.8 330 46.4
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-64 250.8 326 53.4
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.3e-63 247.7 244 56.6
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.7e-63 247.3 330 45.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.3e-63 246.9 330 45.2
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 8.7e-63 245.0 330 46.4
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.5e-62 244.2 326 45.1
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.1e-60 238.0 330 44.8
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 1.4e-60 237.7 328 55.5
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 6.9e-60 235.3 330 46.7
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 6.9e-60 235.3 330 44.2
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 6.9e-60 235.3 330 44.5
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 6.9e-60 235.3 330 46.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 9.0e-60 235.0 330 43.9
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.2e-59 234.6 244 48.4
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.1e-54 218.0 289 48.4
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 4.3e-54 216.1 264 52.3
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.4e-52 211.1 212 72.2
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 4.5e-51 206.1 317 43.8
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 4.6e-48 196.1 272 40.1
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 3.9e-47 193.0 153 58.2
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 6.7e-47 192.2 274 40.9
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.8e-45 186.8 146 58.2
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 9.0e-44 181.8 316 48.4
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.7e-42 177.6 153 54.2
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.5e-41 173.7 206 46.1
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 9.3e-41 171.8 153 53.6
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 8.7e-39 165.2 219 38.4
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.5e-34 149.1 326 44.2
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 4.2e-33 146.4 112 62.5
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 2.2e-29 134.0 289 44.3
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.4e-27 126.7 308 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 4.5e-27 126.3 313 41.9
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 7.7e-27 125.6 130 50.8
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.9e-25 120.9 310 40.3
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 5.5e-25 119.4 305 40.7
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-24 118.2 116 48.3
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.6e-22 110.5 84 64.3
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 4.4e-22 109.8 103 56.3
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.0e-19 100.9 100 49.0
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.8e-15 87.8 100 44.0
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 4.1e-12 76.6 54 63.0
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 4.5e-11 73.2 54 63.0
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 1.7e-10 71.2 54 64.8
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 4.2e-09 66.6 77 49.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 8.0e-08 62.4 152 31.6
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 8.0e-08 62.4 126 30.2
MBI10_g15884_MAGBIO Magnolia biondii HOM05D045841 ORTHO05D006945 1.8e-07 61.2 100 44.0


User provided reference genes

Program Settings