Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.6e-198 694.9 392 100.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.6e-159 564.7 434 77.4
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.0e-104 382.9 400 55.2
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.3e-101 372.1 450 50.0
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-100 369.8 439 53.1
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.6e-100 369.8 439 53.1
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.2e-99 366.7 415 52.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 8.5e-99 364.8 432 50.7
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-98 364.0 439 52.6
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.2e-98 362.8 401 53.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.2e-98 362.5 429 52.2
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.6e-97 360.5 429 49.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.6e-97 359.4 413 50.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.9e-97 358.2 450 48.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.8e-96 357.1 450 51.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-96 357.1 428 49.5
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.0e-96 356.3 434 49.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.7e-96 355.1 428 50.7
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 6.7e-96 355.1 462 47.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 6.7e-96 355.1 432 49.3
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-95 354.4 428 50.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 3.3e-95 352.8 448 48.0
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.3e-95 352.8 431 52.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.4e-95 352.4 425 49.4
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.7e-95 351.3 434 48.6
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 9.7e-95 351.3 431 50.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 2.2e-94 350.1 434 49.8
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.2e-94 350.1 441 48.1
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.8e-94 349.7 427 50.8
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-94 349.7 448 50.0
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.8e-94 349.0 444 49.5
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 6.3e-94 348.6 447 47.9
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.2e-94 348.2 457 47.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.2e-94 348.2 444 49.3
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 8.2e-94 348.2 445 53.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.1e-93 347.8 425 50.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.8e-93 347.1 459 46.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-93 346.7 446 50.4
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.1e-93 345.9 417 51.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 6.9e-93 345.1 392 51.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 9.1e-93 344.7 449 47.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.0e-92 343.6 456 49.6
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.6e-92 343.2 481 44.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.6e-92 343.2 431 48.7
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.0e-91 341.3 452 46.5
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.0e-91 341.3 444 48.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.3e-91 340.9 443 47.4
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.8e-91 339.3 449 47.2
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 6.5e-91 338.6 441 52.4
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.5e-91 338.2 481 44.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.4e-90 337.4 425 50.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-90 337.0 457 46.2
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 7.2e-90 335.1 445 47.2
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 7.2e-90 335.1 474 44.9
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.4e-88 330.9 423 49.4
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.8e-88 330.5 460 46.1
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.0e-88 329.7 489 44.0
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 5.2e-88 328.9 493 43.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 8.8e-88 328.2 460 44.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-87 327.8 422 52.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.1e-87 327.8 476 43.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.6e-87 326.6 489 43.1
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 2.6e-87 326.6 437 50.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 3.3e-87 326.2 498 43.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 4.4e-87 325.9 427 48.2
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.4e-87 325.9 482 43.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.3e-86 324.3 482 43.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.2e-86 323.6 441 45.1
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.8e-86 323.2 437 51.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.3e-86 322.0 397 49.1
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.3e-86 322.0 482 43.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.4e-85 320.9 444 49.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.4e-85 320.9 448 48.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.4e-85 320.9 424 46.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 2.4e-85 320.1 495 47.1
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.1e-85 319.7 426 50.9
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 3.1e-85 319.7 504 41.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.1e-85 319.7 428 48.6
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.0e-85 318.5 421 49.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 9.1e-85 318.2 422 51.4
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.6e-84 316.6 481 43.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 5.9e-84 315.5 425 48.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 5.9e-84 315.5 448 45.5
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.0e-83 314.7 424 49.8
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.7e-83 313.9 447 46.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.9e-83 313.2 428 48.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.5e-83 311.6 420 48.6
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.2e-82 309.3 447 43.0
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 7.2e-82 308.5 508 41.3
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.6e-81 307.4 521 39.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.7e-81 306.6 431 48.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.0e-80 304.7 456 43.2
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 8.8e-80 301.6 482 40.7
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.5e-79 300.8 519 39.9
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.0e-79 300.4 449 46.8
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.8e-77 293.9 438 42.7
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.1e-77 293.1 476 45.6
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.6e-76 290.8 434 45.9
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.5e-76 289.3 487 43.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.9e-75 286.6 413 46.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.7e-73 280.0 405 44.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 4.7e-73 279.3 176 77.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.0e-72 278.1 522 43.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 4.0e-72 276.2 457 40.7
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.0e-72 276.2 434 43.3
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.8e-72 275.4 320 48.8
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.2e-71 274.6 169 78.7
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 9.8e-71 271.6 453 41.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.7e-70 270.8 174 77.0
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.8e-70 270.0 508 38.4
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.8e-70 270.0 177 76.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 4.8e-70 269.2 383 45.2
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 6.3e-70 268.9 395 43.8
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 6.3e-70 268.9 271 56.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.3e-70 268.5 360 45.8
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.0e-68 263.8 447 41.4
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.9e-54 216.1 416 47.8
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.1e-53 214.9 380 42.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.2e-53 211.8 128 79.7
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.3e-51 208.0 354 44.6
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 3.9e-51 206.5 352 42.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.9e-50 204.1 371 39.6
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.6e-44 183.0 488 34.8
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.9e-43 179.9 325 38.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 5.0e-43 179.5 165 58.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.8e-41 173.7 179 53.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 8.3e-38 162.2 411 36.3
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.0e-35 153.7 369 34.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.2e-33 148.3 157 49.0
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.7e-33 146.4 157 50.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.1e-29 132.5 290 36.2
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.5e-26 124.8 147 42.2
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.4e-22 109.0 65 80.0
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.3e-19 101.7 97 57.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 6.2e-17 92.8 164 39.0
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.1e-17 92.4 52 82.7
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.6e-15 87.4 52 75.0
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 9.9e-15 85.5 64 68.8
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 9.9e-15 85.5 64 68.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.8e-14 83.6 163 39.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.2e-13 80.5 49 71.4
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.2e-12 78.6 59 57.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 5.1e-11 73.2 102 40.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 5.1e-11 73.2 102 40.2


User provided reference genes

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