Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.2e-92 342.4 194 100.0
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 6.1e-66 254.6 198 78.3
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.2e-59 231.9 212 70.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 7.2e-59 231.1 209 67.5
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.1e-58 229.6 201 74.1
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.6e-58 228.8 214 67.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 4.7e-58 228.4 210 70.0
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.7e-58 228.4 208 70.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 6.1e-58 228.0 212 68.9
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.0e-57 227.3 212 69.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.2e-57 224.9 212 66.5
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 6.8e-57 224.6 213 67.1
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 8.8e-57 224.2 209 66.0
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-56 223.8 214 69.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-56 223.0 209 65.6
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.0e-56 223.0 199 72.4
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-56 222.6 206 68.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.4e-56 222.2 224 64.3
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.4e-56 222.2 212 66.5
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.4e-56 221.9 195 65.6
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.5e-56 221.1 208 65.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.8e-56 220.7 214 66.8
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 9.8e-56 220.7 211 66.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.3e-55 220.3 207 65.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.2e-55 219.5 210 66.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.8e-55 219.2 221 63.8
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 3.7e-55 218.8 211 65.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.1e-54 217.2 202 65.8
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-54 216.5 208 68.3
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.1e-54 215.7 211 68.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.1e-54 215.7 205 68.8
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.1e-54 215.3 219 63.0
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.1e-54 215.3 219 63.0
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.1e-54 215.3 207 65.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.2e-54 214.2 209 65.1
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-53 213.8 233 61.4
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.6e-53 213.4 203 67.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.7e-53 212.6 193 66.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.7e-53 212.6 201 66.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.9e-53 211.5 126 86.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 7.7e-53 211.1 210 66.2
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.0e-52 210.7 208 63.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-52 210.3 233 61.8
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-52 210.3 233 61.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.3e-52 210.3 215 65.6
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.3e-52 210.3 221 63.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.3e-52 210.3 205 65.4
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.7e-52 209.9 231 59.3
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.3e-52 209.5 218 63.8
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.3e-52 209.5 126 86.5
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.9e-52 209.1 217 64.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.9e-52 209.1 217 64.1
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.8e-52 208.8 127 85.8
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 5.0e-52 208.4 209 59.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.0e-52 208.4 206 66.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 8.6e-52 207.6 198 67.2
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.6e-52 207.6 207 64.7
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.5e-51 206.8 221 61.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.9e-51 206.5 224 61.6
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-51 206.5 228 59.6
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.9e-51 206.5 204 63.7
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.9e-51 206.5 127 83.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.5e-51 206.1 203 67.5
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.5e-51 206.1 209 63.2
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.5e-51 206.1 217 62.7
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 3.3e-51 205.7 229 61.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.3e-51 205.3 234 59.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.3e-51 205.3 126 82.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 5.6e-51 204.9 211 64.5
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.6e-51 204.9 204 65.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.6e-50 203.4 204 62.3
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.6e-50 203.4 207 64.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.6e-50 203.4 224 60.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.8e-50 202.6 205 64.9
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.8e-50 202.6 209 56.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.6e-50 202.2 209 64.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.6e-50 202.2 223 61.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 4.7e-50 201.8 206 65.5
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 4.7e-50 201.8 254 55.5
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 8.0e-50 201.1 211 57.3
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.0e-49 200.7 200 64.0
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.0e-49 200.7 234 57.3
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.0e-49 198.7 231 57.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 4.0e-49 198.7 127 81.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 4.0e-49 198.7 249 55.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.2e-49 198.4 227 53.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.5e-48 196.8 228 58.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-48 196.8 231 56.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-48 196.8 228 58.3
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.0e-48 196.4 122 83.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.6e-48 196.1 228 58.3
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.6e-48 196.1 183 70.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-48 195.7 231 56.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 2.2e-47 193.0 124 81.5
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 3.2e-46 189.1 246 55.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.2e-46 189.1 190 62.6
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 9.2e-46 187.6 191 61.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 3.5e-45 185.7 126 75.4
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 4.6e-45 185.3 201 61.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.0e-44 184.1 109 87.2
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-44 183.7 127 74.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.7e-44 183.3 127 74.8
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 5.0e-44 181.8 106 86.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-43 180.6 212 57.1
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.9e-43 179.9 210 56.2
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.6e-43 178.3 105 85.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 7.3e-43 177.9 207 58.9
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 4.7e-42 175.3 125 71.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 6.2e-42 174.9 125 70.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.2e-42 174.9 200 56.5
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 8.0e-42 174.5 203 58.6
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.4e-41 173.7 125 70.4
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 4.0e-41 172.2 208 56.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.2e-40 170.6 201 57.7
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 9.8e-40 167.5 192 53.6
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.4e-39 164.9 194 54.1
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.1e-38 162.2 175 61.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.4e-38 161.8 125 69.6
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.0e-37 159.8 200 53.0
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.7e-36 156.8 124 66.1
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 8.6e-36 154.5 95 78.9
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-35 153.3 101 80.2
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-34 150.2 167 62.9
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.6e-34 149.1 189 54.0
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.7e-34 148.7 109 72.5
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.2e-34 148.3 192 58.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 8.1e-34 147.9 195 47.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-33 147.5 208 49.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.3e-33 146.4 126 61.1
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-33 146.0 131 60.3
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 4.0e-33 145.6 109 68.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 3.4e-32 142.5 193 46.6
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 5.8e-32 141.7 169 60.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 7.5e-32 141.4 202 44.6
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-31 140.6 203 51.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.2e-31 139.8 179 51.4
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.2e-31 139.8 179 51.4
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 4.9e-31 138.7 186 47.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 3.5e-29 132.5 87 78.2
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 6.6e-28 128.3 160 59.4
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-26 123.6 201 51.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 6.2e-26 121.7 128 54.7
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 6.2e-26 121.7 103 58.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 5.2e-25 118.6 211 46.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.6e-24 114.8 82 74.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 8.6e-20 101.3 79 65.8
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-19 100.5 135 55.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.8e-18 96.3 150 46.0
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.8e-18 96.3 144 53.5
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.8e-17 93.6 133 54.1
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.4e-14 83.2 48 79.2
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.9e-12 75.9 65 56.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 6.6e-12 75.1 113 41.6
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 2.1e-10 70.1 120 36.7
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 2.1e-10 70.1 50 68.0
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 9.0e-09 64.7 40 67.5
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.6e-08 63.2 37 73.0
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 5.8e-08 62.0 94 42.6
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-06 57.0 46 63.0


User provided reference genes

Program Settings