Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 0.0e+00 1535.8 784 100.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.8e-292 1008.1 711 76.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 8.1e-101 372.5 805 36.0
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-97 361.3 847 34.4
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-94 351.3 785 35.5
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.6e-94 349.0 791 35.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.9e-90 337.4 842 34.0
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 7.1e-89 332.8 830 32.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.4e-84 318.5 810 33.8
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.1e-80 304.7 832 30.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.6e-80 303.5 833 31.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 6.7e-79 299.7 824 33.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.9e-76 289.7 826 31.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.7e-74 285.0 765 31.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.8e-74 283.9 818 30.9
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 6.5e-74 283.1 801 32.6
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 8.5e-74 282.7 837 31.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.7e-72 277.7 830 32.3
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 2.7e-72 277.7 830 32.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.6e-72 277.3 754 31.6
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 4.6e-72 276.9 779 32.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.1e-72 276.6 814 31.2
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.0e-71 275.8 844 30.9
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.3e-71 274.6 765 30.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.9e-71 273.9 715 32.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.7e-71 273.1 806 31.9
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.8e-69 266.9 757 31.4
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.4e-68 265.4 807 31.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.2e-67 262.3 796 31.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.0e-67 261.5 785 30.2
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.5e-67 260.4 825 31.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 7.7e-67 259.6 811 28.9
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.0e-66 259.2 766 31.2
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.9e-66 257.7 791 29.3
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.9e-66 257.7 779 30.4
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.1e-65 255.8 789 32.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.4e-65 255.4 843 29.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.2e-65 254.2 807 31.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 3.2e-65 254.2 790 30.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 5.5e-65 253.4 822 31.3
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 7.2e-65 253.1 766 32.6
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 2.1e-64 251.5 738 30.6
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.7e-64 251.1 776 30.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 7.9e-64 249.6 798 29.7
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.0e-63 249.2 788 30.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.0e-63 249.2 788 31.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.4e-63 248.8 775 30.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.8e-63 248.4 769 32.5
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.5e-62 245.4 787 30.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.0e-62 245.0 781 29.7
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.6e-62 244.6 714 29.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.3e-61 242.3 790 29.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.2e-61 241.5 795 29.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.2e-61 241.5 792 28.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-60 239.2 833 29.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.1e-60 239.2 804 31.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.1e-60 237.7 807 29.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.1e-60 237.7 793 30.4
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.2e-59 235.7 806 28.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-58 231.5 806 29.8
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.9e-58 231.1 790 29.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.8e-58 230.7 916 28.1
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.5e-58 229.9 826 28.0
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 8.5e-58 229.6 802 28.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.2e-57 227.3 811 28.7
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 7.2e-57 226.5 814 29.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.2e-56 225.7 876 28.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.6e-56 225.3 811 28.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.1e-56 224.9 822 28.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 8.0e-56 223.0 805 28.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.0e-55 221.1 722 29.5
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.2e-55 220.3 905 27.5
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 8.8e-55 219.5 794 29.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.7e-54 216.9 741 27.9
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.5e-54 216.5 800 28.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.1e-52 211.1 803 28.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 5.3e-52 210.3 787 28.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.6e-51 208.8 993 25.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.0e-51 208.4 786 28.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.7e-51 208.0 877 26.3
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.9e-50 204.5 833 26.2
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.5e-49 201.4 823 27.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.2e-49 201.1 741 29.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.2e-49 199.9 809 28.4
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 7.2e-49 199.9 725 27.7
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.6e-48 197.6 390 37.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.6e-48 197.6 758 27.8
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.4e-47 195.7 766 27.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.4e-47 195.7 739 27.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.0e-47 194.1 848 26.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 4.4e-46 190.7 961 26.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.3e-45 189.1 709 28.1
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.7e-45 188.7 934 27.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 8.3e-45 186.4 811 26.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-44 184.9 907 26.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 7.7e-43 179.9 774 28.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-41 176.0 380 37.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.5e-41 175.6 694 28.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.8e-39 166.8 379 36.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-36 159.5 766 25.3
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.2e-36 156.4 311 40.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 8.6e-34 149.8 399 33.3
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.5e-33 148.3 518 30.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.3e-33 147.5 696 25.7
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.6e-33 147.1 400 33.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.3e-33 146.7 362 35.4
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.1e-32 145.2 391 32.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.1e-32 143.7 636 26.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.3e-29 136.0 270 38.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.7e-29 135.6 377 31.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-29 135.6 411 30.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.2e-29 135.2 407 32.2
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.4e-29 133.7 530 26.4
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 8.3e-29 133.3 405 32.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-28 132.9 386 30.3
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.4e-28 132.5 409 31.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.2e-28 131.3 375 31.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-27 129.4 545 28.1
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-27 129.4 411 30.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-27 129.0 406 30.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-27 128.6 391 30.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.7e-27 128.3 362 29.6
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.9e-26 124.4 388 30.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.0e-26 124.0 385 29.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.0e-26 124.0 385 29.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 5.0e-26 124.0 370 31.4
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.6e-26 123.6 363 32.0
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 8.6e-26 123.2 786 24.9
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.1e-25 122.9 384 30.2
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.5e-25 121.7 362 29.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.3e-25 121.3 378 30.7
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 4.3e-25 120.9 382 29.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 7.3e-25 120.2 382 29.1
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.1e-24 118.6 112 53.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.5e-22 112.5 869 23.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.7e-21 109.0 129 44.2
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.2e-21 108.6 479 25.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.3e-21 106.7 198 36.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.4e-20 105.9 667 25.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.4e-20 105.1 665 25.0
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.6e-19 102.4 482 27.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-18 99.4 652 24.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-18 99.4 603 25.9
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-18 99.0 406 29.8
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.3e-17 93.6 502 25.9
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.6e-16 91.3 332 28.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 4.4e-14 84.3 83 50.6
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.4e-12 78.6 73 49.3
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 7.1e-12 77.0 126 34.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 9.2e-12 76.6 497 25.8
CDE07G1414 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 2.1e-11 75.5 81 51.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 5.1e-10 70.9 49 69.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.6e-08 65.9 62 48.4
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-08 65.5 50 60.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-08 65.5 50 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.7e-08 64.3 96 35.4
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.9e-07 60.1 759 20.4
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 2.0e-06 58.9 91 41.8
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.6e-06 58.5 124 31.5
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.4e-06 58.2 37 70.3


User provided reference genes

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