Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 8.1e-306 1053.1 614 100.0
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 4.4e-118 429.5 689 46.3
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 1.1e-116 424.9 671 45.0
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 7.7e-115 418.7 711 44.6
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 8.6e-106 388.7 670 43.0
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 3.3e-105 386.7 695 44.2
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 7.3e-105 385.6 711 42.1
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 4.7e-104 382.9 674 41.4
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 9.8e-102 375.2 656 43.8
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 3.2e-100 370.2 672 43.6
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 7.0e-100 369.0 668 43.1
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 1.2e-99 368.2 688 43.5
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 1.0e-98 365.2 683 40.4
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 5.0e-98 362.8 695 41.4
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 2.5e-97 360.5 714 38.8
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 3.3e-97 360.1 705 41.3
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 3.3e-97 360.1 702 41.5
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 7.3e-97 359.0 692 40.5
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 6.2e-96 355.9 692 39.9
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 6.8e-95 352.4 699 41.6
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 5.8e-94 349.4 691 39.5
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 2.9e-93 347.1 633 41.7
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 1.9e-92 344.4 681 41.0
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 7.1e-92 342.4 696 40.4
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 2.7e-91 340.5 701 41.5
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 4.6e-91 339.7 657 40.5
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 7.8e-91 339.0 663 40.6
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 1.5e-89 334.7 693 39.5
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.2e-88 331.6 657 40.0
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 2.8e-88 330.5 684 39.2
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 4.0e-87 326.6 692 37.7
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 6.8e-87 325.9 658 39.5
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 6.8e-87 325.9 658 38.9
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 1.2e-86 325.1 701 40.1
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 1.2e-86 325.1 681 38.6
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.2e-85 320.9 702 40.9
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 4.1e-84 316.6 689 39.6
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 4.1e-84 316.6 708 39.8
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 5.4e-84 316.2 690 38.6
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.1e-83 314.3 709 39.9
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 2.7e-83 313.9 680 38.1
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 1.3e-82 311.6 654 40.4
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 1.3e-82 311.6 699 36.6
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.7e-82 311.2 696 38.5
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 5.1e-82 309.7 668 40.1
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 5.1e-82 309.7 675 39.6
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 5.1e-82 309.7 691 37.8
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 6.6e-82 309.3 662 40.0
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 6.6e-82 309.3 687 36.8
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 8.6e-82 308.9 668 41.2
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 4.3e-81 306.6 739 36.5
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 7.3e-81 305.8 688 37.4
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 3.6e-80 303.5 684 37.0
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 3.6e-80 303.5 695 39.7
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 6.2e-80 302.8 693 39.1
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 5.2e-79 299.7 683 39.7
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 8.9e-79 298.9 692 37.9
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 1.2e-78 298.5 698 38.0
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 1.5e-78 298.1 684 38.9
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 1.5e-78 298.1 691 38.1
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 4.4e-78 296.6 685 39.0
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 7.1e-76 289.3 683 37.5
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 1.3e-74 285.0 693 38.8
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 2.3e-74 284.3 691 39.4
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 3.9e-74 283.5 670 38.2
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 5.1e-74 283.1 687 38.4
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 8.7e-74 282.3 698 37.8
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 5.6e-73 279.6 706 35.6
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 9.6e-73 278.9 667 39.1
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 1.4e-71 275.0 701 37.2
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 1.8e-71 274.6 691 38.1
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 1.8e-71 274.6 712 36.5
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 3.1e-71 273.9 668 38.0
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 6.9e-71 272.7 695 38.3
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 7.6e-70 269.2 697 35.7
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 1.3e-69 268.5 713 36.7
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 3.8e-69 266.9 696 38.1
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 3.2e-68 263.8 686 36.7
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 7.1e-68 262.7 689 37.6
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 9.3e-68 262.3 712 36.0
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 1.1e-65 255.4 773 33.5
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 1.1e-65 255.4 709 36.1
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.9e-65 254.6 697 37.9
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 1.9e-65 254.6 694 36.5
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 1.6e-64 251.5 622 37.0
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 3.6e-64 250.4 674 38.6
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 8.1e-64 249.2 728 36.0
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 1.1e-63 248.8 691 34.9
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.4e-63 248.4 697 37.0
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 1.8e-63 248.1 632 38.3
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.4e-63 247.7 752 35.8
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 2.4e-63 247.7 701 34.8
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 2.9e-61 240.7 550 36.0
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 4.2e-60 236.9 549 36.1
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 7.9e-59 232.6 674 36.2
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 2.1e-56 224.6 675 32.7
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 4.8e-56 223.4 699 36.6
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 8.1e-56 222.6 556 35.1
Cfa015266 Carpinus fangiana HOM05D005056 ORTHO05D006487 3.4e-54 217.2 482 40.0
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.4e-54 217.2 529 35.9
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 7.6e-54 216.1 700 35.1
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 2.2e-53 214.5 368 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.2e-51 208.8 740 34.2
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 3.0e-50 204.1 731 32.6
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 5.1e-50 203.4 277 52.0
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 2.8e-48 197.6 466 35.2
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 2.4e-47 194.5 274 49.6
SEGI_41310 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 2.3e-42 177.9 245 48.6
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 2.8e-40 171.0 495 34.3
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 3.8e-37 160.6 225 46.7
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 1.4e-36 158.7 523 32.5
Thhalv10001371m.g Eutrema salsugineum HOM05D005056 ORTHO05D006487 4.2e-36 157.1 622 32.0
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 9.4e-36 156.0 216 48.6
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 7.9e-35 152.9 503 32.0
Lj7A489G23 Lonicera japonica HOM05D005056 ORTHO05D006487 2.5e-33 147.9 243 43.6
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 5.3e-31 140.2 177 46.9
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 2.0e-25 121.7 657 25.3
Eucgr.H00313 Eucalyptus grandis HOM05D005056 ORTHO05D006487 7.4e-25 119.8 534 30.1
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 5.9e-22 110.2 177 44.6
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 1.9e-20 105.1 163 44.8
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.9e-20 105.1 113 55.8
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.9e-20 105.1 113 55.8
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 2.5e-20 104.8 163 44.8
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 2.1e-19 101.7 94 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 3.6e-19 100.9 260 37.3
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 3.6e-19 100.9 177 43.5
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.4e-18 99.0 99 56.6
Lj7A489T32 Lonicera japonica HOM05D005056 ORTHO05D006487 2.6e-17 94.7 245 34.7
Hma1.2p1_0126F.1_g059250 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 1.3e-16 92.4 95 57.9
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 2.8e-16 91.3 118 50.8
Hma1.2p1_1145F.1_g261360 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 1.1e-15 89.4 95 54.7
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 3.5e-14 84.3 62 71.0
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 4.5e-14 84.0 177 37.3
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 1.9e-12 78.6 63 66.7
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 2.7e-11 74.7 127 43.3
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 2.3e-10 71.6 77 54.5
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 2.3e-10 71.6 77 54.5
TAR636G1142 Trochodendron aralioides HOM05D005056 ORTHO05D006487 2.3e-10 71.6 67 62.7
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 3.0e-10 71.2 225 29.8
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 1.2e-09 69.3 102 48.0
Hund19725 Selenicereus undatus HOM05D000823 ORTHO05D000088 6.3e-08 63.5 94 43.6
Hund05076 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.2e-06 59.3 123 34.1
Aqoxy5G03459 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 3.5e-06 57.8 83 45.8


User provided reference genes

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