Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 4.4e-52 207.6 99 100.0
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.6e-38 162.5 99 79.8
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 1.3e-35 152.9 95 78.9
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 3.1e-34 148.3 93 77.4
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.2e-33 146.4 93 75.3
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.6e-33 146.0 95 73.7
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.0e-33 145.6 93 74.2
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.7e-33 145.2 99 70.7
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.7e-33 145.2 99 71.7
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 7.8e-33 143.7 93 74.2
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.3e-32 142.1 93 72.0
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.3e-32 142.1 93 72.0
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 5.0e-32 141.0 93 73.1
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.1e-31 139.8 95 71.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.5e-31 139.4 93 73.1
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 5.6e-31 137.5 93 71.0
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 1.2e-30 136.3 93 74.2
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.6e-30 136.0 93 71.0
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.6e-30 136.0 92 68.5
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 2.8e-30 135.2 93 69.9
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 2.8e-30 135.2 93 67.7
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.6e-30 134.8 93 69.9
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.6e-30 134.8 93 69.9
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 3.6e-30 134.8 93 69.9
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 4.7e-30 134.4 99 65.7
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 4.7e-30 134.4 93 71.0
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 6.1e-30 134.0 93 72.0
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 8.0e-30 133.7 94 71.3
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 8.0e-30 133.7 99 65.7
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 8.0e-30 133.7 99 65.7
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.8e-29 132.5 93 67.7
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 1.8e-29 132.5 93 69.9
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.3e-29 132.1 99 64.6
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 2.3e-29 132.1 93 69.9
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 4.0e-29 131.3 92 67.4
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 5.2e-29 131.0 93 68.8
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 5.2e-29 131.0 92 69.6
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 6.8e-29 130.6 97 69.1
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 8.9e-29 130.2 93 67.7
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.2e-28 129.8 93 67.7
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.2e-28 129.8 92 66.3
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 2.0e-28 129.0 93 68.8
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 2.6e-28 128.6 95 66.3
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 4.4e-28 127.9 92 69.6
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 4.4e-28 127.9 94 71.3
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 4.4e-28 127.9 93 67.7
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 5.7e-28 127.5 91 68.1
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 7.5e-28 127.1 101 65.3
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.3e-27 126.3 93 66.7
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.3e-27 126.3 93 67.7
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.3e-27 126.3 96 67.7
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.7e-27 125.9 93 67.7
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.7e-27 125.9 93 66.7
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.7e-27 125.9 93 66.7
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.9e-27 125.2 93 67.7
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.9e-27 125.2 93 67.7
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.9e-27 125.2 93 67.7
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 3.7e-27 124.8 93 65.6
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.9e-27 124.4 93 67.7
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 4.9e-27 124.4 93 65.6
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 4.9e-27 124.4 93 65.6
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 4.9e-27 124.4 93 64.5
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.1e-26 123.2 95 63.2
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 1.1e-26 123.2 94 70.2
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.4e-26 122.9 93 65.6
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.8e-26 122.5 90 66.7
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-26 122.5 95 65.3
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.4e-26 122.1 93 65.6
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.4e-26 122.1 99 61.6
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 2.4e-26 122.1 95 61.1
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 3.2e-26 121.7 94 67.0
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 3.2e-26 121.7 88 63.6
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 4.1e-26 121.3 93 64.5
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 9.2e-26 120.2 75 80.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.7e-25 118.6 96 61.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 4.6e-25 117.9 133 50.4
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.3e-24 116.3 104 58.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.3e-24 116.3 144 45.8
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.9e-24 114.8 70 72.9
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.1e-23 113.2 70 72.9
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.6e-22 109.4 92 65.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-21 106.7 81 63.0
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.4e-21 106.3 95 58.9
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 2.6e-20 102.1 91 59.3
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 3.4e-20 101.7 94 62.8
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 8.3e-19 97.1 164 40.2
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 9.2e-18 93.6 64 70.3
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.0e-17 92.4 63 71.4
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.5e-17 91.7 69 63.8
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 8.6e-16 87.0 49 73.5
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.9e-15 85.9 49 73.5
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.5e-15 85.5 65 69.2
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 2.5e-15 85.5 94 52.1
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.3e-15 85.1 49 75.5
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.6e-14 82.8 54 66.7
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 8.1e-14 80.5 68 61.8
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 6.8e-13 77.4 63 63.5
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 4.4e-12 74.7 64 62.5
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 5.1e-08 61.2 56 62.5
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 4.3e-07 58.2 47 66.0
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 3.6e-06 55.1 30 76.7


User provided reference genes

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