Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.4e-101 372.9 182 100.0
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.5e-37 159.5 160 51.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.1e-35 154.1 153 48.4
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 4.0e-35 152.1 169 46.2
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.2e-35 151.8 163 46.0
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 5.2e-35 151.8 151 47.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 8.9e-35 151.0 153 47.7
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 8.9e-35 151.0 169 48.5
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.2e-34 150.6 153 47.7
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.5e-34 150.2 159 45.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.5e-34 150.2 156 46.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.4e-34 149.1 153 47.1
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.4e-34 148.7 163 44.8
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 4.4e-34 148.7 153 49.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 4.4e-34 148.7 159 43.4
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 5.8e-34 148.3 159 44.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 5.8e-34 148.3 152 46.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 9.9e-34 147.5 167 43.7
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 9.9e-34 147.5 164 43.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.3e-33 147.1 154 46.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.2e-33 146.4 157 44.6
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-33 146.4 159 44.7
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.8e-33 145.6 156 46.8
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 3.8e-33 145.6 152 46.1
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.8e-33 145.6 159 45.3
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 4.9e-33 145.2 159 43.4
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-32 144.1 160 46.2
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.1e-32 144.1 165 44.8
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.1e-32 144.1 154 47.4
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.9e-32 143.3 155 45.2
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.9e-32 143.3 156 42.3
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.4e-32 142.9 149 45.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.2e-32 142.5 150 45.3
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 4.1e-32 142.1 159 43.4
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.1e-32 142.1 177 41.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 5.4e-32 141.7 160 42.5
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 7.1e-32 141.4 151 47.7
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 7.1e-32 141.4 154 42.9
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 9.2e-32 141.0 159 42.8
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.2e-31 140.6 159 42.1
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.6e-31 140.2 154 42.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.1e-31 139.8 156 43.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.7e-31 139.4 153 46.4
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.7e-31 139.4 163 42.3
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 3.5e-31 139.0 153 45.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 3.5e-31 139.0 163 40.5
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 4.6e-31 138.7 157 42.7
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-30 137.5 148 41.9
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-30 137.5 148 41.9
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.7e-30 136.7 162 43.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 2.3e-30 136.3 159 40.9
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-30 136.3 154 42.9
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 2.3e-30 136.3 153 43.1
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-30 136.0 162 43.2
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.0e-30 136.0 155 43.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.0e-30 136.0 150 45.3
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.0e-30 136.0 151 45.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 3.9e-30 135.6 159 44.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 5.1e-30 135.2 154 43.5
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 6.6e-30 134.8 146 44.5
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 6.6e-30 134.8 157 41.4
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 8.6e-30 134.4 150 45.3
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 8.6e-30 134.4 151 43.7
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.1e-29 134.0 164 43.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.5e-29 133.7 163 41.7
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-29 133.3 154 42.9
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.3e-29 132.5 156 43.6
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.3e-29 132.5 155 43.9
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.3e-29 132.5 153 44.4
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.6e-29 131.7 154 42.2
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 7.3e-29 131.3 152 42.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 7.3e-29 131.3 151 42.4
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.2e-28 130.6 158 39.9
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.6e-28 130.2 156 40.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-28 130.2 155 43.2
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.6e-28 130.2 155 43.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.6e-28 130.2 155 43.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.6e-28 130.2 161 41.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-28 129.8 155 42.6
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-28 129.8 154 42.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.1e-28 129.8 154 42.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.8e-28 129.4 157 40.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.6e-28 129.0 170 37.6
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 6.2e-28 128.3 151 45.7
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 6.2e-28 128.3 156 41.0
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 6.2e-28 128.3 155 42.6
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 6.2e-28 128.3 161 41.0
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 6.2e-28 128.3 150 42.0
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.4e-27 127.1 151 41.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.9e-27 124.8 152 40.1
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 6.9e-27 124.8 147 41.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-26 124.0 157 38.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.5e-26 123.6 152 41.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.7e-25 120.2 199 35.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.7e-25 120.2 158 42.4
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.9e-25 119.4 181 39.2
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.8e-25 119.0 199 35.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 8.4e-25 117.9 169 39.6
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 8.4e-25 117.9 169 39.6
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 8.4e-25 117.9 158 37.3
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.4e-25 117.9 187 36.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-24 117.5 149 41.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.1e-24 117.5 160 38.1
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-24 117.5 187 37.4
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.4e-24 117.1 145 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.9e-24 116.7 152 35.5
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.2e-24 115.9 156 40.4
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.2e-24 115.9 132 47.0
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 5.4e-24 115.2 169 39.1
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 5.4e-24 115.2 132 41.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 9.3e-24 114.4 202 33.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.3e-24 114.4 128 43.8
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 9.3e-24 114.4 169 39.1
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.2e-23 114.0 152 34.2
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-23 113.2 150 40.7
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.7e-23 112.8 150 40.0
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 3.5e-23 112.5 161 39.8
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.0e-22 110.9 128 43.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.3e-22 110.5 123 47.2
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.7e-22 110.2 156 33.3
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.9e-22 109.0 158 36.7
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.9e-22 109.0 158 36.7
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-21 107.5 162 38.3
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.3e-21 105.9 161 37.9
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.6e-21 105.1 130 43.8
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 7.3e-21 104.8 163 35.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.6e-21 104.4 199 33.7
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.3e-20 104.0 198 33.8
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.6e-20 102.4 164 38.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.4e-19 99.8 189 32.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 5.3e-19 98.6 154 34.4
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.2e-18 97.4 167 31.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.0e-18 96.7 99 47.5
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 4.5e-18 95.5 158 32.9
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.2e-17 93.2 166 32.5
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.1e-16 88.2 187 32.1
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 9.3e-16 87.8 113 38.1
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-14 84.0 78 48.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.8e-14 83.6 125 37.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.3e-14 83.2 114 36.8
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.1e-14 82.0 137 33.6
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 5.1e-14 82.0 78 52.6
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.7e-14 81.6 243 26.3
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 6.7e-14 81.6 173 29.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.1e-13 80.9 72 48.6
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.9e-13 80.1 82 50.0
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.3e-12 77.4 72 45.8
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-12 76.6 151 31.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 6.2e-12 75.1 112 35.7
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-11 74.3 207 24.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.1e-11 72.8 79 41.8
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.3e-11 72.0 65 52.3
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 5.3e-11 72.0 130 33.1
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 6.9e-11 71.6 72 45.8
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-10 70.5 80 41.2
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 9.9e-10 67.8 74 41.9
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 9.9e-10 67.8 74 41.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-09 67.0 69 40.6
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.4e-08 63.2 65 35.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.6e-07 60.5 68 41.2
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.0e-06 57.8 143 29.4


User provided reference genes

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