Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2131 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 1.6e-77 292.7 154 100.0
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 3.2e-57 225.3 126 94.4
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 9.5e-54 213.8 126 87.3
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 1.2e-53 213.4 126 88.9
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 1.2e-53 213.4 126 86.5
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 2.1e-53 212.6 126 86.5
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 2.1e-53 212.6 126 86.5
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 2.1e-53 212.6 126 86.5
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 2.1e-53 212.6 126 88.1
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 2.1e-53 212.6 126 88.1
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 2.8e-53 212.2 126 85.7
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 2.8e-53 212.2 126 86.5
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 3.6e-53 211.8 126 86.5
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 3.6e-53 211.8 126 87.3
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 4.7e-53 211.5 126 85.7
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 4.7e-53 211.5 126 87.3
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 6.1e-53 211.1 152 75.0
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 6.1e-53 211.1 126 85.7
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 6.1e-53 211.1 126 87.3
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 8.0e-53 210.7 126 85.7
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 8.0e-53 210.7 126 86.5
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-53 210.7 126 86.5
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-53 210.7 126 86.5
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 8.0e-53 210.7 126 84.9
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 1.0e-52 210.3 126 85.7
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 1.4e-52 209.9 126 85.7
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.8e-52 209.5 126 84.1
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 1.8e-52 209.5 126 84.9
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 1.8e-52 209.5 126 84.9
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.8e-52 209.5 126 84.9
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 1.8e-52 209.5 126 85.7
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 2.3e-52 209.1 126 84.1
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 84.1
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 84.1
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 84.9
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 86.5
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 84.9
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 3.1e-52 208.8 126 86.5
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 5.2e-52 208.0 126 86.5
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 6.8e-52 207.6 126 85.7
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 6.8e-52 207.6 126 87.3
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 6.8e-52 207.6 126 83.3
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 6.8e-52 207.6 126 85.7
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 8.9e-52 207.2 126 86.5
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 8.9e-52 207.2 126 83.3
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 8.9e-52 207.2 126 84.1
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 1.2e-51 206.8 126 84.9
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 1.2e-51 206.8 126 84.1
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 1.5e-51 206.5 126 83.3
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 1.5e-51 206.5 126 84.9
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 2.0e-51 206.1 126 83.3
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.6e-51 205.7 126 84.1
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 2.6e-51 205.7 126 82.5
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 2.6e-51 205.7 126 84.1
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 2.6e-51 205.7 126 86.5
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 2.6e-51 205.7 126 83.3
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 3.4e-51 205.3 126 84.1
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 3.4e-51 205.3 126 85.7
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 3.4e-51 205.3 126 85.7
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 3.4e-51 205.3 126 84.1
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 5.8e-51 204.5 126 84.1
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 5.8e-51 204.5 126 85.7
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 7.5e-51 204.1 126 84.1
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 7.5e-51 204.1 126 83.3
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 7.5e-51 204.1 126 85.7
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 7.5e-51 204.1 126 85.7
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 7.5e-51 204.1 127 83.5
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 7.5e-51 204.1 127 83.5
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 9.8e-51 203.8 126 85.7
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 9.8e-51 203.8 126 83.3
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.3e-50 203.4 126 86.5
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 1.3e-50 203.4 126 84.1
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 1.3e-50 203.4 126 84.9
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 1.3e-50 203.4 127 84.3
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 1.3e-50 203.4 126 84.1
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 1.3e-50 203.4 126 82.5
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 1.3e-50 203.4 127 82.7
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 1.7e-50 203.0 126 84.1
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 1.7e-50 203.0 126 84.9
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 1.7e-50 203.0 126 83.3
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 2.2e-50 202.6 126 84.9
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 4.9e-50 201.4 126 84.1
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 4.9e-50 201.4 126 84.1
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 6.4e-50 201.1 125 86.4
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 6.4e-50 201.1 125 86.4
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 6.4e-50 201.1 126 83.3
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.1e-49 200.3 126 84.1
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 1.1e-49 200.3 126 83.3
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 1.1e-49 200.3 126 83.3
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 1.1e-49 200.3 126 83.3
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 1.1e-49 200.3 126 83.3
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 1.4e-49 199.9 126 81.7
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.9e-49 199.5 126 81.0
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 1.9e-49 199.5 126 83.3
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 2.4e-49 199.1 126 85.7
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 2.4e-49 199.1 126 83.3
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 3.2e-49 198.7 126 82.5
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.2e-49 198.7 126 83.3
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 4.1e-49 198.4 126 83.3
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 5.4e-49 198.0 126 81.0
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 5.4e-49 198.0 123 85.4
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.2e-48 196.8 126 80.2
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.6e-48 196.4 126 84.9
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 2.7e-48 195.7 126 80.2
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 4.6e-48 194.9 126 84.1
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 6.0e-48 194.5 127 79.5
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 6.0e-48 194.5 129 80.6
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 7.8e-48 194.1 127 79.5
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 7.8e-48 194.1 127 79.5
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 7.8e-48 194.1 127 79.5
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 7.8e-48 194.1 127 79.5
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 7.8e-48 194.1 127 79.5
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.0e-47 193.7 127 80.3
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.3e-47 193.4 127 79.5
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 1.3e-47 193.4 127 79.5
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 1.3e-47 193.4 127 79.5
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 2.3e-47 192.6 122 80.3
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 2.3e-47 192.6 127 79.5
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 2.3e-47 192.6 127 79.5
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 3.0e-47 192.2 117 85.5
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 3.0e-47 192.2 127 78.7
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.0e-47 192.2 127 78.7
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 3.9e-47 191.8 126 79.4
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 3.9e-47 191.8 126 79.4
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 1.9e-46 189.5 126 79.4
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 5.6e-46 188.0 126 79.4
Actinidia19950 Actinidia chinensis HOM05D003223 ORTHO05D004865 3.4e-43 178.7 125 75.2
Duzib106G1784 Durio zibethinus HOM05D003223 ORTHO05D004865 1.9e-41 172.9 126 76.2
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.1e-36 155.6 122 69.7
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 5.2e-36 154.8 126 68.3
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 1.9e-33 146.4 97 81.4
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 9.2e-33 144.1 113 67.3
Actinidia20597 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.1e-30 137.1 98 75.5
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.2e-27 127.1 127 55.1
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.4e-27 125.6 73 87.7
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 8.4e-26 120.9 108 57.4
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 2.4e-25 119.4 84 73.8
MCO03G244 Micromonas commoda HOM05D003223 ORTHO05D004865 1.6e-24 116.7 122 50.0
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 8.7e-23 110.9 71 85.9
PRCOL_00006825 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 5.6e-22 108.2 123 48.8
MCO16G616 Micromonas commoda HOM05D003223 ORTHO05D004865 5.3e-20 101.7 125 50.4
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 5.8e-19 98.2 60 85.0
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 1.4e-17 93.6 90 60.0
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 2.6e-11 72.8 46 82.6
CAN.G1211.4 Capsicum annuum HOM05D003223 ORTHO05D004865 1.0e-07 60.8 74 52.7


User provided reference genes

Program Settings