Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.9e-100 368.6 194 100.0
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.8e-60 235.3 133 95.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.6e-43 178.3 163 65.0
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 8.0e-42 174.5 188 54.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.0e-41 174.1 169 61.5
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 5.2e-41 171.8 157 65.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.2e-41 171.8 205 55.6
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.5e-40 170.2 200 54.0
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-40 169.9 171 55.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.0e-40 169.9 179 59.8
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.9e-39 166.0 164 59.1
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 6.4e-39 164.9 171 57.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.4e-38 163.7 183 55.2
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.4e-38 163.7 198 54.5
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.4e-38 162.9 173 54.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.1e-38 162.2 160 59.4
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.1e-38 162.2 173 55.5
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 9.2e-38 161.0 205 51.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.2e-38 161.0 111 70.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 9.2e-38 161.0 177 54.2
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.0e-37 159.8 171 56.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.0e-37 159.8 111 69.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-37 159.8 111 69.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.7e-37 159.5 111 70.3
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 4.6e-37 158.7 111 67.6
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.6e-37 158.7 111 68.5
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 4.6e-37 158.7 111 69.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.8e-37 157.9 111 69.4
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.7e-36 156.8 167 55.7
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.3e-36 156.4 143 60.1
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 2.3e-36 156.4 111 68.5
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.0e-36 156.0 157 57.3
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.0e-36 156.0 161 55.9
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 6.6e-36 154.8 185 53.0
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 6.6e-36 154.8 125 63.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 8.6e-36 154.5 158 57.6
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.1e-35 154.1 178 53.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.1e-35 154.1 111 66.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.5e-35 152.9 111 70.3
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.3e-35 152.5 164 56.7
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.3e-35 152.1 179 54.2
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.3e-35 151.4 111 65.8
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.3e-35 151.4 147 60.5
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.2e-34 150.6 181 51.9
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-34 150.2 111 65.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.1e-34 149.8 148 58.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.8e-34 149.4 147 53.1
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 3.6e-34 149.1 111 64.9
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 3.6e-34 149.1 111 64.9
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 3.6e-34 149.1 171 55.6
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.6e-34 149.1 160 56.9
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.7e-34 148.7 111 64.9
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 4.7e-34 148.7 111 64.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 8.1e-34 147.9 113 67.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.1e-33 147.5 108 63.9
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.8e-33 146.7 186 51.6
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.8e-33 146.7 135 60.0
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 64.5
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 64.5
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 64.5
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.3e-33 146.4 165 52.7
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 5.2e-33 145.2 163 54.0
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 5.2e-33 145.2 163 54.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.8e-33 144.8 109 64.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.8e-33 144.8 157 56.7
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 8.9e-33 144.4 169 53.8
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.2e-32 144.1 163 54.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.5e-32 143.7 105 65.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-32 143.7 105 65.7
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-32 143.7 187 49.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.0e-32 143.3 169 53.3
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.4e-32 142.5 108 65.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 3.4e-32 142.5 163 54.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.4e-32 142.1 157 55.4
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 5.8e-32 141.7 109 65.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 9.8e-32 141.0 193 50.8
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.7e-31 140.2 261 41.4
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 4.9e-31 138.7 105 65.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 8.3e-31 137.9 111 62.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.2e-29 134.0 99 70.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 3.9e-28 129.0 182 47.8
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.1e-27 127.5 107 53.3
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.9e-27 126.7 129 54.3
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.8e-25 120.2 133 50.4
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 9.9e-24 114.4 106 55.7
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.7e-23 113.6 73 76.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.9e-23 112.8 89 68.5
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 5.4e-22 108.6 73 75.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 9.2e-22 107.8 142 43.7
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.2e-21 107.5 74 67.6
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.1e-21 106.7 100 58.0
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.1e-21 106.7 100 58.0
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.6e-21 105.5 141 44.7
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.0e-20 104.4 110 55.5
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.3e-20 104.0 157 42.7
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.7e-20 103.6 142 43.0
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.3e-20 103.2 153 41.2
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.3e-20 103.2 153 41.2
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 6.6e-20 101.7 100 52.0
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-19 100.1 100 52.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.9e-19 100.1 85 61.2
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.3e-19 99.4 119 47.9
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.3e-19 98.2 119 47.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.2e-18 97.4 151 41.1
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.6e-18 97.1 143 44.1
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.1e-18 96.7 85 60.0
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.8e-18 96.3 85 56.5
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.6e-18 95.9 120 44.2
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 4.7e-18 95.5 138 39.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 6.2e-18 95.1 133 44.4
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 8.1e-18 94.7 135 43.7
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 8.1e-18 94.7 135 43.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 8.1e-18 94.7 92 54.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.4e-17 94.0 94 52.1
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.8e-17 93.6 159 43.4
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.4e-17 93.2 129 43.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.1e-17 92.8 87 50.6
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 4.0e-17 92.4 148 41.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 4.0e-17 92.4 87 52.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.0e-17 92.4 127 44.9
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.2e-17 92.0 133 43.6
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 5.2e-17 92.0 107 47.7
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 6.9e-17 91.7 61 73.8
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 6.9e-17 91.7 60 75.0
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.9e-17 91.7 135 39.3
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 8.9e-17 91.3 91 59.3
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 8.9e-17 91.3 112 45.5
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-16 90.9 150 44.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-16 90.9 155 38.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.2e-16 90.9 120 48.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.5e-16 90.5 100 50.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 2.0e-16 90.1 85 51.8
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 2.6e-16 89.7 134 41.8
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 2.6e-16 89.7 68 67.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.4e-16 89.0 89 52.8
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 4.4e-16 89.0 131 38.2
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 5.8e-16 88.6 189 32.8
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 5.8e-16 88.6 100 49.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.7e-15 87.0 144 35.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.7e-15 87.0 89 51.7
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.9e-15 86.3 89 49.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.9e-15 85.5 89 49.4
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 4.9e-15 85.5 126 51.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.4e-14 84.0 89 48.3
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 1.9e-14 83.6 86 50.0
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.9e-14 83.6 86 50.0
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 3.2e-14 82.8 102 49.0
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 4.2e-14 82.4 110 44.5
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 7.1e-14 81.6 103 42.7
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 9.3e-14 81.3 110 43.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.6e-13 80.5 99 45.5
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.3e-12 77.4 110 41.8
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.5e-11 73.9 124 30.6
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.3e-10 70.9 87 41.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.2e-08 64.3 89 52.8
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 4.5e-08 62.4 142 36.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.2e-07 60.1 110 37.3
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 3.8e-07 59.3 38 78.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.1e-06 57.8 63 47.6
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.4e-06 56.6 74 45.9
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 3.2e-06 56.2 96 45.8
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 3.2e-06 56.2 72 48.6
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 5.4e-06 55.5 92 48.9


User provided reference genes

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