Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 0.0e+00 1268.1 654 100.0
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 6.4e-293 1010.4 630 84.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 4.5e-214 748.4 641 63.7
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.0e-213 747.3 637 62.5
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 7.0e-207 724.5 641 61.5
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 9.2e-207 724.2 650 60.9
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.5e-206 722.2 656 60.1
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.1e-204 717.2 652 60.1
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 7.3e-204 714.5 637 59.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.1e-203 713.0 645 59.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-203 711.4 641 61.2
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 6.2e-203 711.4 648 58.3
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.8e-202 709.9 651 60.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.8e-202 709.9 654 58.7
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.2e-202 708.4 644 58.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 6.8e-202 708.0 649 58.4
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 6.8e-202 708.0 643 59.9
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 5.8e-201 704.9 649 58.7
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.9e-200 702.6 637 59.0
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.9e-200 702.6 652 60.3
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 4.9e-200 701.8 643 58.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 8.3e-200 701.0 644 58.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.4e-199 700.3 639 58.8
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.2e-199 699.1 664 59.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.4e-199 698.4 648 60.3
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 2.0e-198 696.4 642 58.9
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.0e-197 694.1 645 58.3
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.0e-197 692.6 638 60.0
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 8.6e-197 691.0 646 59.0
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.3e-196 689.1 642 59.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.6e-193 679.5 641 59.1
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.6e-193 679.5 641 59.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 5.8e-193 678.3 645 57.4
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.3e-192 677.2 641 58.8
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.7e-192 676.8 650 55.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.7e-192 675.6 627 57.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 4.9e-192 675.2 653 57.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-191 674.1 641 59.3
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.1e-191 674.1 642 57.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 3.2e-191 672.5 635 57.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.1e-191 672.2 640 59.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 5.4e-191 671.8 648 57.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 5.4e-191 671.8 644 56.7
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 9.2e-191 671.0 641 57.6
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.2e-190 670.6 641 57.4
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.2e-190 670.6 645 56.0
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.1e-190 669.8 655 56.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.7e-190 669.5 649 56.2
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.0e-189 667.5 636 58.8
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.3e-189 667.2 645 56.1
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 2.3e-189 666.4 636 56.8
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 5.1e-189 665.2 637 56.8
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-188 664.1 645 56.0
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.1e-188 664.1 640 58.8
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 2.5e-188 662.9 671 56.3
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.6e-188 661.8 644 56.1
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 7.3e-188 661.4 644 57.8
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 7.3e-188 661.4 656 55.8
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 4.7e-187 658.7 636 57.1
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 6.2e-187 658.3 640 56.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.1e-187 657.9 690 55.1
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.8e-186 656.8 639 57.3
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.1e-186 656.0 635 58.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.0e-186 655.6 635 56.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 5.2e-186 655.2 632 58.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 7.6e-185 651.4 633 56.2
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 4.9e-184 648.7 635 57.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.1e-183 647.5 636 56.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.1e-183 647.5 642 56.4
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 7.1e-183 644.8 645 56.7
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-182 644.0 638 56.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.6e-182 643.7 635 55.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 2.1e-182 643.3 638 56.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 6.0e-182 641.7 639 54.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 7.8e-182 641.3 635 57.0
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.6e-181 638.3 641 57.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 6.6e-181 638.3 641 55.4
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 6.6e-181 638.3 574 61.5
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 2.0e-177 626.7 632 57.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 9.9e-177 624.4 639 55.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.4e-176 621.7 664 52.9
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.4e-175 618.6 648 55.6
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 7.1e-175 618.2 635 54.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 4.6e-174 615.5 637 54.8
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.7e-173 613.6 637 55.9
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 5.6e-172 608.6 637 55.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.3e-171 607.4 652 52.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-170 602.8 638 55.5
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 9.0e-170 601.3 637 54.5
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.5e-169 599.0 640 55.8
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.3e-168 597.4 646 55.0
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.2e-168 596.7 638 54.4
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 7.1e-167 591.7 635 54.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.3e-165 587.4 652 54.3
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.3e-165 587.4 652 54.3
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.3e-165 587.4 652 54.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.0e-157 559.7 624 52.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.8e-152 542.7 417 65.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 2.0e-145 520.4 676 48.1
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 3.1e-138 496.5 411 64.0
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.5e-135 486.9 414 61.8
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-134 484.2 551 51.9
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 3.6e-134 483.0 420 58.3
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.6e-134 483.0 551 51.9
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 8.8e-133 478.4 420 58.1
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 4.4e-132 476.1 412 60.9
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.3e-131 474.6 420 58.1
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 6.3e-131 472.2 415 58.8
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 6.3e-131 472.2 415 58.8
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.3e-130 469.2 422 60.7
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.6e-129 466.8 415 58.8
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 2.5e-127 460.3 408 58.3
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 3.6e-126 456.4 417 56.6
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.7e-125 452.2 408 59.1
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.5e-124 451.1 405 58.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 5.7e-124 449.1 590 45.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.7e-124 448.4 408 57.4
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.3e-123 448.0 408 56.4
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.8e-123 446.0 408 58.1
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.6e-121 440.3 403 56.8
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.3e-117 427.2 416 56.7
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.0e-117 426.8 641 42.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.2e-117 426.0 420 56.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.8e-115 420.2 406 56.7
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.1e-111 408.3 640 41.7
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.0e-109 401.7 403 56.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.0e-109 400.2 298 68.8
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 5.2e-109 399.4 403 52.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.3e-107 394.8 648 39.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 5.9e-105 386.0 403 51.6
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.7e-104 384.4 403 51.9
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 3.8e-104 383.3 403 51.6
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 5.0e-104 382.9 411 53.0
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 7.2e-103 379.0 451 48.1
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.1e-98 365.2 623 38.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.0e-93 347.1 361 53.2
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 5.4e-90 336.3 313 58.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.5e-89 333.6 391 49.1
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 7.5e-84 315.8 420 44.5
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.9e-83 313.2 224 73.7
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.4e-77 295.0 395 46.8
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.4e-76 290.0 181 77.9
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.9e-58 231.5 365 38.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-55 221.9 161 71.4
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.9e-50 204.9 686 28.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 2.0e-44 184.9 146 58.9
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.1e-42 179.1 442 30.8
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-35 155.2 103 74.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-35 155.2 103 74.8
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-27 128.6 90 64.4
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.5e-23 115.5 237 38.8
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.6e-17 94.4 87 57.5
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.9e-11 74.7 138 41.3
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.1e-10 72.8 138 40.6
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.4e-10 72.4 94 45.7
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 8.0e-09 66.6 58 55.2


User provided reference genes

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