Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1728 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 2.2e-143 512.3 267 100.0
CDE07G1409 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 4.1e-105 385.2 265 78.5
MBI06_g17215_MAGBIO Magnolia biondii HOM05D003851 ORTHO05D005657 2.7e-104 382.5 265 74.0
Aqoxy3G00152 Aquilegia oxysepala HOM05D003851 ORTHO05D005657 1.9e-102 376.3 265 71.3
Nn4g24048 Nelumbo nucifera HOM05D003851 ORTHO05D005657 8.9e-100 367.5 265 72.1
Os10g0495300 Oryza sativa ssp. japonica HOM05D003851 ORTHO05D005657 1.5e-99 366.7 265 69.8
Atru.chr11.357 Acer truncatum HOM05D003851 ORTHO05D005657 2.6e-99 365.9 265 70.2
ATR0602G154 Amborella trichopoda HOM05D003851 ORTHO05D005657 1.7e-98 363.2 265 69.8
CANSAT01G1493 Cannabis sativa HOM05D003851 ORTHO05D005657 1.7e-98 363.2 265 69.4
Zm00001eb044760 Zea mays HOM05D003851 ORTHO05D005657 4.9e-98 361.7 265 67.9
PGR102G1971 Punica granatum HOM05D003851 ORTHO05D005657 8.3e-98 360.9 265 69.1
CiPaw.05G246300 Carya illinoinensis HOM05D003851 ORTHO05D005657 1.1e-97 360.5 265 69.8
CDE04G3131 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 1.9e-97 359.8 265 68.3
Prupe.1G321000 Prunus persica HOM05D003851 ORTHO05D005657 1.9e-97 359.8 265 69.4
Eucgr.B02881 Eucalyptus grandis HOM05D003851 ORTHO05D005657 1.2e-96 357.1 265 67.9
TAR622G1410 Trochodendron aralioides HOM05D003851 ORTHO05D005657 2.1e-96 356.3 265 69.4
RcHm_v2.0_Chr4g0433861 Rosa chinensis HOM05D003851 ORTHO05D005657 4.6e-96 355.1 265 68.7
ClCG01G006040 Citrullus lanatus HOM05D003851 ORTHO05D005657 1.0e-95 354.0 265 69.1
SEGI_09716 Sequoiadendron giganteum HOM05D003851 ORTHO05D005657 1.0e-95 354.0 265 67.2
Cfa015793 Carpinus fangiana HOM05D003851 ORTHO05D005657 1.3e-95 353.6 265 68.7
FvH4_4g26260 Fragaria vesca HOM05D003851 ORTHO05D005657 1.3e-95 353.6 265 68.3
FAN12G1256 Fragaria x ananassa HOM05D003851 ORTHO05D005657 1.3e-95 353.6 265 68.3
FAN12G3131 Fragaria x ananassa HOM05D003851 ORTHO05D005657 1.3e-95 353.6 265 68.3
MELO3C005328.2 Cucumis melo HOM05D003851 ORTHO05D005657 1.7e-95 353.2 265 69.1
MD16G1033300 Malus domestica HOM05D003851 ORTHO05D005657 1.7e-95 353.2 265 67.2
GSVIVG01011794001 Vitis vinifera HOM05D003851 ORTHO05D005657 1.7e-95 353.2 264 68.2
FAN07G1894 Fragaria x ananassa HOM05D003851 ORTHO05D005657 3.0e-95 352.4 265 67.9
ECA234G0471 Erigeron canadensis HOM05D003851 ORTHO05D005657 3.9e-95 352.1 266 68.8
FAN17G0190 Fragaria x ananassa HOM05D003851 ORTHO05D005657 5.1e-95 351.7 265 67.9
FAN22G1865 Fragaria x ananassa HOM05D003851 ORTHO05D005657 6.6e-95 351.3 265 67.9
Lj3A876T45 Lonicera japonica HOM05D003851 ORTHO05D005657 6.6e-95 351.3 266 69.5
AUR62039549 Chenopodium quinoa HOM05D003851 ORTHO05D005657 1.1e-94 350.5 265 67.2
CAN.G1489.5 Capsicum annuum HOM05D003851 ORTHO05D005657 1.5e-94 350.1 265 67.9
Hma1.2p1_0114F.1_g055400 Hydrangea macrophylla HOM05D003851 ORTHO05D005657 1.5e-94 350.1 266 69.2
Haze_00700 Corylus avellana HOM05D003851 ORTHO05D005657 1.9e-94 349.7 264 68.2
HPP92_013139 Vanilla planifolia HOM05D003851 ORTHO05D005657 1.9e-94 349.7 265 66.0
EL10Ac6g14256 Beta vulgaris HOM05D003851 ORTHO05D005657 2.5e-94 349.4 265 66.8
Dinv16173 Davidia involucrata HOM05D003851 ORTHO05D005657 2.5e-94 349.4 266 68.0
Gohir.A03G148400 Gossypium hirsutum HOM05D003851 ORTHO05D005657 2.5e-94 349.4 265 67.2
Gorai.005G192900 Gossypium raimondii HOM05D003851 ORTHO05D005657 2.5e-94 349.4 265 67.5
Lj5g0011385 Lotus japonicus HOM05D003851 ORTHO05D005657 2.5e-94 349.4 265 67.2
TAR629G0282 Trochodendron aralioides HOM05D003851 ORTHO05D005657 2.5e-94 349.4 265 67.5
MD13G1031100 Malus domestica HOM05D003851 ORTHO05D005657 3.3e-94 349.0 265 66.4
CsaV3_5G028640 Cucumis sativus L. HOM05D003851 ORTHO05D005657 4.3e-94 348.6 265 68.3
Phvul.007G035300 Phaseolus vulgaris HOM05D003851 ORTHO05D005657 4.3e-94 348.6 265 67.2
Rhsim09G0101400 Rhododendron simsii HOM05D003851 ORTHO05D005657 4.3e-94 348.6 266 68.0
Sed0026980 Sechium edule HOM05D003851 ORTHO05D005657 4.3e-94 348.6 265 68.3
AUR62014128 Chenopodium quinoa HOM05D003851 ORTHO05D005657 5.6e-94 348.2 265 67.2
Manes.06G062600 Manihot esculenta HOM05D003851 ORTHO05D005657 5.6e-94 348.2 265 66.8
Gohir.D02G171500 Gossypium hirsutum HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 67.2
Manes.14G136300 Manihot esculenta HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 67.5
Peaxi162Scf00119g01313 Petunia axillaris HOM05D003851 ORTHO05D005657 7.3e-94 347.8 266 66.2
Solyc05g008430.4 Solanum lycopersicum HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 66.4
Sopen05g004260 Solanum pennellii HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 66.4
TPR.G4868 Trifolium pratense HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 67.2
TWI31G1382 Tripterygium wilfordii HOM05D003851 ORTHO05D005657 7.3e-94 347.8 265 67.2
arahy.Tifrunner.gnm1.ann1.QBU7FE Arachis hypogaea HOM05D003851 ORTHO05D005657 9.5e-94 347.4 265 66.8
Peaxi162Scf00205g00924 Petunia axillaris HOM05D003851 ORTHO05D005657 9.5e-94 347.4 266 66.2
Sc11g0003990 Simmondsia chinensis HOM05D003851 ORTHO05D005657 9.5e-94 347.4 265 67.2
TAR629G0727 Trochodendron aralioides HOM05D003851 ORTHO05D005657 9.5e-94 347.4 265 67.2
COL.COLO4_10968 Corchorus olitorius HOM05D003851 ORTHO05D005657 1.2e-93 347.1 265 68.3
CiPaw.06G014300 Carya illinoinensis HOM05D003851 ORTHO05D005657 1.6e-93 346.7 265 66.8
PGSC0003DMG400030558 Solanum tuberosum HOM05D003851 ORTHO05D005657 1.6e-93 346.7 265 66.8
arahy.Tifrunner.gnm1.ann1.GYNY95 Arachis hypogaea HOM05D003851 ORTHO05D005657 2.1e-93 346.3 265 66.4
Glyma.10G266600 Glycine max HOM05D003851 ORTHO05D005657 2.8e-93 345.9 265 66.4
Lsat_1_v5_gn_4_15461 Lactuca sativa HOM05D003851 ORTHO05D005657 2.8e-93 345.9 266 68.0
Lalb_Chr02g0145581 Lupinus albus HOM05D003851 ORTHO05D005657 2.8e-93 345.9 265 66.0
Thecc.02G217200 Theobroma cacao HOM05D003851 ORTHO05D005657 2.8e-93 345.9 265 66.8
AL1G27200 Arabidopsis lyrata HOM05D003851 ORTHO05D005657 3.6e-93 345.5 265 65.7
Ca_23695_v3 Cicer arietinum L. HOM05D003851 ORTHO05D005657 3.6e-93 345.5 265 66.0
Dinv04890 Davidia involucrata HOM05D003851 ORTHO05D005657 3.6e-93 345.5 262 68.3
VMungo0720G3117 Vigna mungo HOM05D003851 ORTHO05D005657 3.6e-93 345.5 265 66.8
CSS0002048 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 6.2e-93 344.7 266 68.0
Actinidia36692 Actinidia chinensis HOM05D003851 ORTHO05D005657 8.1e-93 344.4 266 67.7
SGA_v2.0_scaffold170G38822 Striga asiatica HOM05D003851 ORTHO05D005657 8.1e-93 344.4 266 66.5
Aa31LG1G30 Aethionema arabicum HOM05D003851 ORTHO05D005657 1.1e-92 344.0 265 65.7
BcaC05g25444 Brassica carinata HOM05D003851 ORTHO05D005657 1.1e-92 344.0 265 65.7
C05p13260 Brassica napus HOM05D003851 ORTHO05D005657 1.1e-92 344.0 265 65.7
BraA06t24294Z Brassica rapa HOM05D003851 ORTHO05D005657 1.1e-92 344.0 265 65.7
Medtr1g108690 Medicago truncatula HOM05D003851 ORTHO05D005657 1.1e-92 344.0 265 66.0
Psat6g222920 Pisum sativum HOM05D003851 ORTHO05D005657 1.4e-92 343.6 265 66.4
vmacro10621 Vaccinium macrocarpon HOM05D003851 ORTHO05D005657 1.8e-92 343.2 266 67.3
Glyma.20G124000 Glycine max HOM05D003851 ORTHO05D005657 2.3e-92 342.8 265 66.4
QL01p002786 Quercus lobata HOM05D003851 ORTHO05D005657 2.3e-92 342.8 265 65.7
Sopen04g002640 Solanum pennellii HOM05D003851 ORTHO05D005657 2.3e-92 342.8 266 64.7
Potri.008G126900 Populus trichocarpa HOM05D003851 ORTHO05D005657 3.1e-92 342.4 264 67.4
Actinidia14940 Actinidia chinensis HOM05D003851 ORTHO05D005657 5.2e-92 341.7 266 66.5
Lalb_Chr17g0338751 Lupinus albus HOM05D003851 ORTHO05D005657 8.9e-92 340.9 265 65.7
SalBow8G4927 Salvia bowleyana HOM05D003851 ORTHO05D005657 8.9e-92 340.9 266 65.0
Sp1g13470 Schrenkiella parvula HOM05D003851 ORTHO05D005657 8.9e-92 340.9 265 65.3
Thhalv10006787m.g Eutrema salsugineum HOM05D003851 ORTHO05D005657 1.2e-91 340.5 265 64.9
Lalb_Chr21g0308571 Lupinus albus HOM05D003851 ORTHO05D005657 1.2e-91 340.5 265 64.2
MSTRG.2194 Avicennia marina HOM05D003851 ORTHO05D005657 1.5e-91 340.1 266 65.8
BolC5t30063H Brassica oleracea HOM05D003851 ORTHO05D005657 1.5e-91 340.1 265 65.3
Oeu064205.1 Olea europaea HOM05D003851 ORTHO05D005657 1.5e-91 340.1 266 64.3
Solyc04g007560.3 Solanum lycopersicum HOM05D003851 ORTHO05D005657 1.5e-91 340.1 266 64.3
Carub.0001s1490 Capsella rubella HOM05D003851 ORTHO05D005657 2.0e-91 339.7 265 65.3
Migut.E00398 Erythranthe guttata HOM05D003851 ORTHO05D005657 2.0e-91 339.7 266 65.4
Nitab4.5_0010188g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 2.0e-91 339.7 266 64.7
Nitab4.5_0001648g0010 Nicotiana tabacum HOM05D003851 ORTHO05D005657 2.6e-91 339.3 266 65.0
A06p11140 Brassica napus HOM05D003851 ORTHO05D005657 3.4e-91 339.0 265 64.5
SMO141G0055 Selaginella moellendorffii HOM05D003851 ORTHO05D005657 3.4e-91 339.0 265 64.2
SGA_v2.0_scaffold376G50293 Striga asiatica HOM05D003851 ORTHO05D005657 3.4e-91 339.0 266 64.3
Ah.16g102720 Amaranthus hybridus HOM05D003851 ORTHO05D005657 4.4e-91 338.6 265 64.2
BcaB02g06581 Brassica carinata HOM05D003851 ORTHO05D005657 4.4e-91 338.6 265 64.9
CARHR015650 Cardamine hirsuta HOM05D003851 ORTHO05D005657 4.4e-91 338.6 265 64.5
Cpa.g.sc65.100 Carica papaya HOM05D003851 ORTHO05D005657 4.4e-91 338.6 265 66.0
Duzib268G1062 Durio zibethinus HOM05D003851 ORTHO05D005657 7.6e-91 337.8 265 65.7
HanXRQChr12g0377711 Helianthus annuus HOM05D003851 ORTHO05D005657 7.6e-91 337.8 266 66.5
THA.LOC104805047 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 7.6e-91 337.8 265 64.9
CSS0020493 Camellia sinensis var. sinensis HOM05D003851 ORTHO05D005657 9.9e-91 337.4 266 66.2
Cc11_g09150 Coffea canephora HOM05D003851 ORTHO05D005657 9.9e-91 337.4 266 65.0
THA.LOC104824160 Tarenaya hassleriana HOM05D003851 ORTHO05D005657 1.3e-90 337.0 265 65.3
BcaNung05516 Brassica carinata HOM05D003851 ORTHO05D005657 2.2e-90 336.3 265 63.8
AT1G15130 Arabidopsis thaliana HOM05D003851 ORTHO05D005657 3.7e-90 335.5 265 63.4
MSTRG.878 Avicennia marina HOM05D003851 ORTHO05D005657 3.7e-90 335.5 266 64.7
PSO017G5384 Papaver somniferum HOM05D003851 ORTHO05D005657 3.7e-90 335.5 265 63.0
Hund25010 Selenicereus undatus HOM05D003851 ORTHO05D005657 3.7e-90 335.5 270 64.1
A09p61550 Brassica napus HOM05D003851 ORTHO05D005657 4.9e-90 335.1 265 64.2
BraA09t41528Z Brassica rapa HOM05D003851 ORTHO05D005657 4.9e-90 335.1 265 64.2
Mapoly0004s0114 Marchantia polymorpha HOM05D003851 ORTHO05D005657 4.9e-90 335.1 265 64.5
PSO478G0832 Papaver somniferum HOM05D003851 ORTHO05D005657 4.9e-90 335.1 265 63.0
C08p45140 Brassica napus HOM05D003851 ORTHO05D005657 8.4e-90 334.3 265 63.4
BolC8t52062H Brassica oleracea HOM05D003851 ORTHO05D005657 8.4e-90 334.3 265 63.4
CAN.G822.7 Capsicum annuum HOM05D003851 ORTHO05D005657 1.1e-89 334.0 266 63.5
Potri.010G116400 Populus trichocarpa HOM05D003851 ORTHO05D005657 2.4e-89 332.8 264 65.9
HanXRQChr17g0567071 Helianthus annuus HOM05D003851 ORTHO05D005657 3.2e-89 332.4 266 65.8
Oeu062877.3 Olea europaea HOM05D003851 ORTHO05D005657 7.1e-89 331.3 266 63.5
unitig_699.g19528 Utricularia gibba HOM05D003851 ORTHO05D005657 1.7e-87 326.6 266 62.0
Pp3c24_13730 Physcomitrium patens HOM05D003851 ORTHO05D005657 6.6e-87 324.7 266 63.9
EL10Ac4g09588 Beta vulgaris HOM05D003851 ORTHO05D005657 1.1e-86 323.9 265 63.8
AagrBONN_evm.TU.Sc2ySwM_340.388 Anthoceros agrestis HOM05D003851 ORTHO05D005657 1.5e-86 323.6 265 61.9
SalBow8G1489 Salvia bowleyana HOM05D003851 ORTHO05D005657 4.3e-86 322.0 266 61.3
Lsat_1_v5_gn_8_41561 Lactuca sativa HOM05D003851 ORTHO05D005657 6.2e-85 318.2 265 61.9
ECA233G2027 Erigeron canadensis HOM05D003851 ORTHO05D005657 1.8e-84 316.6 266 61.3
DCAR_023618 Daucus carota HOM05D003851 ORTHO05D005657 1.3e-82 310.5 245 66.1
Sabra08G0095800 Salix brachista HOM05D003851 ORTHO05D005657 1.1e-81 307.4 333 52.3
Pp3c8_14930 Physcomitrium patens HOM05D003851 ORTHO05D005657 2.1e-80 303.1 266 59.8
BcaB03g14554 Brassica carinata HOM05D003851 ORTHO05D005657 3.1e-76 289.3 265 57.7
CBR_g20272 Chara braunii HOM05D003851 ORTHO05D005657 4.0e-76 288.9 265 54.7
Ciclev10014287m.g Citrus clementina HOM05D003851 ORTHO05D005657 6.9e-76 288.1 223 65.9
CDE08G0886 Ceratophyllum demersum HOM05D003851 ORTHO05D005657 2.0e-75 286.6 211 67.3
Actinidia15239 Actinidia chinensis HOM05D003851 ORTHO05D005657 1.4e-73 280.4 219 66.7
Hma1.2p1_0000F.1_g000200 Hydrangea macrophylla HOM05D003851 ORTHO05D005657 1.0e-58 231.1 182 65.9
Zm00001eb221160 Zea mays HOM05D003851 ORTHO05D005657 1.5e-51 207.2 167 64.7
DCAR_023457 Daucus carota HOM05D003851 ORTHO05D009229 1.3e-50 204.1 173 61.8
Nitab4.5_0000350g0210 Nicotiana tabacum HOM05D003851 ORTHO05D005657 1.6e-48 197.2 265 43.8
Nitab4.5_0004524g0020 Nicotiana tabacum HOM05D003851 ORTHO05D005657 1.8e-47 193.7 265 43.0
Os02g0638400 Oryza sativa ssp. japonica HOM05D003851 ORTHO05D049714 1.1e-44 184.5 175 51.4
Zm00001eb248370 Zea mays HOM05D003851 ORTHO05D049714 3.1e-44 183.0 175 52.0
Cre01.g004350 Chlamydomonas reinhardtii HOM05D003851 ORTHO05D005657 5.1e-39 165.6 270 35.2
ECA233G2539 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.1e-36 156.4 139 59.0
PRCOL_00001562 Prasinoderma coloniale HOM05D003851 ORTHO05D005657 9.1e-36 154.8 273 36.6
MCO15G191 Micromonas commoda HOM05D003851 ORTHO05D005657 2.0e-35 153.7 280 34.6
Hma1.2p1_1699F.1_g298160 Hydrangea macrophylla HOM05D003851 ORTHO05D228451 3.6e-24 116.3 90 66.7
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 8.8e-23 111.7 226 33.6
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 1.5e-22 110.9 226 33.2
Cfa022433 Carpinus fangiana HOM05D003851 ORTHO05D016913 1.8e-20 104.0 266 29.7
QL01p041527 Quercus lobata HOM05D000176 ORTHO05D000106 4.2e-17 92.8 140 39.3
ECA234G1408 Erigeron canadensis HOM05D003851 ORTHO05D005657 4.7e-16 89.4 265 28.3
Hma1.2p1_0374F.1_g138500 Hydrangea macrophylla HOM05D003851 ORTHO05D228295 2.8e-13 80.1 54 70.4
Lsat_1_v5_gn_3_54921 Lactuca sativa HOM05D003851 ORTHO05D229927 2.7e-11 73.6 65 58.5
HanXRQChr15g0494861 Helianthus annuus HOM05D006120 ORTHO05D007913 1.3e-10 71.2 55 60.0
BcaB03g14559 Brassica carinata HOM05D003851 ORTHO05D005657 3.4e-06 56.6 40 62.5


User provided reference genes

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