Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 1.2e-192 676.4 344 100.0
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 6.7e-124 448.0 316 71.2
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 5.8e-120 434.9 356 64.6
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 5.8e-120 434.9 346 64.7
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.2e-119 433.0 347 64.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 2.9e-119 432.6 344 63.7
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 6.5e-119 431.4 339 65.2
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.4e-118 430.3 307 70.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.5e-118 429.5 345 63.8
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 7.2e-118 427.9 319 66.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 9.3e-118 427.6 318 67.9
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.6e-117 426.8 350 62.9
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.3e-116 423.7 309 69.6
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.3e-116 423.7 289 72.7
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.8e-116 423.3 307 69.7
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 3.0e-116 422.5 307 68.7
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 8.7e-116 421.0 346 64.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.1e-115 420.6 307 68.4
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.5e-115 420.2 291 70.4
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.5e-115 419.5 291 71.8
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.5e-115 419.5 310 67.1
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.3e-115 419.1 315 67.9
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 5.7e-115 418.3 303 68.0
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 7.4e-115 417.9 307 68.1
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 7.4e-115 417.9 294 69.7
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 1.3e-114 417.2 318 64.8
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.6e-114 416.8 307 67.1
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.6e-114 416.8 291 70.8
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 2.2e-114 416.4 329 64.4
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 2.8e-114 416.0 307 68.1
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 4.8e-114 415.2 313 65.8
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.1e-113 414.1 306 66.7
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.8e-113 413.3 309 66.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.8e-113 413.3 339 63.1
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.8e-113 413.3 314 66.6
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.1e-113 412.5 303 68.0
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.1e-113 412.5 303 68.3
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 3.1e-113 412.5 341 61.3
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 5.3e-113 411.8 290 71.0
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 5.3e-113 411.8 289 69.6
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 6.9e-113 411.4 331 65.3
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 9.0e-113 411.0 307 66.4
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.2e-112 410.6 344 61.6
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.5e-112 410.2 285 69.8
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.4e-112 409.1 286 70.6
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 7.7e-112 407.9 285 71.6
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.0e-111 407.5 300 69.0
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 1.0e-111 407.5 336 61.3
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 8.5e-111 404.4 285 69.5
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 8.5e-111 404.4 326 63.2
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.1e-110 404.1 318 64.5
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.4e-110 403.7 319 64.6
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.9e-110 403.3 303 66.0
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.9e-110 403.3 303 66.0
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 2.5e-110 402.9 303 66.0
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 5.5e-110 401.7 328 63.4
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.5e-110 401.7 333 62.8
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 5.5e-110 401.7 352 59.9
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 7.2e-110 401.4 332 62.0
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 9.4e-110 401.0 332 62.0
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 9.4e-110 401.0 303 65.3
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.2e-109 400.6 303 64.7
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.7e-109 399.4 358 59.2
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 4.6e-109 398.7 303 65.0
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 4.6e-109 398.7 303 65.0
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.9e-109 397.9 303 65.0
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.0e-108 397.5 336 61.0
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.1e-108 395.2 333 60.7
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.1e-107 394.0 291 66.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.1e-107 394.0 339 61.4
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 5.7e-107 391.7 291 66.7
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 7.4e-107 391.3 321 62.9
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.8e-106 389.4 296 64.9
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 6.3e-106 388.3 273 68.9
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 8.2e-106 387.9 317 65.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 3.1e-105 386.0 340 58.5
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 6.9e-105 384.8 317 63.4
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 7.7e-104 381.3 266 70.3
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 8.5e-103 377.9 339 61.7
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 2.7e-101 372.9 264 69.7
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.0e-99 366.7 299 62.5
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.4e-99 365.5 315 61.3
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.1e-97 360.9 356 57.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.8e-97 360.1 475 45.3
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.5e-94 350.5 265 64.5
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.5e-94 350.5 495 42.8
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 2.8e-90 336.3 229 74.7
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 7.7e-88 328.2 232 66.4
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.8e-87 325.9 568 38.6
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.9e-86 323.6 287 57.5
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 7.2e-86 321.6 348 51.7
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.1e-85 320.1 311 55.6
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 6.1e-85 318.5 314 51.0
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.0e-84 317.8 260 63.8
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 5.2e-84 315.5 298 55.0
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.6e-83 313.2 247 66.4
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.4e-83 312.8 232 65.9
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 7.5e-83 311.6 288 55.2
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.2e-77 294.3 222 66.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.6e-75 286.6 290 50.3
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.6e-71 271.9 184 71.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 9.5e-70 268.1 336 47.0
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 4.6e-56 222.6 170 62.4
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.5e-54 214.9 143 71.3
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 6.2e-53 212.2 313 39.0
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.4e-52 211.1 142 69.7
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 5.2e-52 209.1 205 54.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.9e-49 200.7 219 53.9
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 6.0e-48 195.7 198 52.0
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.3e-47 193.7 234 49.1
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.5e-46 190.3 299 38.5
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 8.9e-44 181.8 203 47.3
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 8.9e-36 155.2 215 41.9
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.3e-31 140.6 214 37.9
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 9.9e-27 125.2 96 63.5
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 4.9e-26 122.9 104 54.8
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.5e-24 116.7 80 71.2
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 7.9e-24 115.5 78 71.8
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 6.9e-20 102.4 90 55.6
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.5e-16 90.1 63 69.8
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 8.7e-15 85.5 75 53.3
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.1e-14 85.1 55 65.5
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.5e-14 84.7 54 77.8
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.5e-14 84.7 153 33.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 6.9e-12 75.9 108 42.6
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 58 62.1
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 58 62.1
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 58 62.1
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 58 62.1
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 58 62.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.5e-11 74.7 58 62.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.5e-11 74.7 58 62.1
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.5e-11 74.7 58 62.1
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 1.5e-06 58.2 49 55.1
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 5.7e-06 56.2 38 63.2


User provided reference genes

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