Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1579 Ceratophyllum demersum HOM05D003633 ORTHO05D043858 3.7e-39 164.5 87 100.0
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 9.2e-22 106.7 86 68.6
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 5.1e-20 100.9 86 66.3
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 1.1e-19 99.8 86 66.3
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 4.3e-19 97.8 85 65.9
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 5.6e-19 97.4 86 65.1
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 5.6e-19 97.4 86 61.6
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 5.6e-19 97.4 86 64.0
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 4.7e-18 94.4 86 62.8
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 6.2e-18 94.0 86 62.8
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 8.1e-18 93.6 85 65.9
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 1.4e-17 92.8 86 62.8
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 1.4e-17 92.8 86 61.6
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 1.8e-17 92.4 86 62.8
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 2.4e-17 92.0 85 61.2
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 3.1e-17 91.7 86 61.6
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 4.0e-17 91.3 86 61.6
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 5.2e-17 90.9 86 58.1
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 1.2e-16 89.7 86 58.1
Hma1.2p1_0218F.1_g092340 Hydrangea macrophylla HOM05D003633 ORTHO05D004245 1.2e-16 89.7 85 63.5
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 1.2e-16 89.7 86 61.6
Ah.08g222470 Amaranthus hybridus HOM05D003633 ORTHO05D004245 1.5e-16 89.4 86 59.3
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.5e-16 89.4 86 62.8
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 1.5e-16 89.4 86 62.8
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 1.5e-16 89.4 86 60.5
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 1.5e-16 89.4 85 63.5
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 2.0e-16 89.0 86 58.1
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 2.0e-16 89.0 86 58.1
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 2.0e-16 89.0 86 61.6
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 2.6e-16 88.6 84 58.3
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 3.4e-16 88.2 86 60.5
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 3.4e-16 88.2 86 61.6
Lalb_Chr04g0249821 Lupinus albus HOM05D003633 ORTHO05D004245 3.4e-16 88.2 86 59.3
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 3.4e-16 88.2 86 59.3
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 5.8e-16 87.4 86 59.3
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 7.6e-16 87.0 85 61.2
TPR.G13306 Trifolium pratense HOM05D003633 ORTHO05D004245 7.6e-16 87.0 86 58.1
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 1.3e-15 86.3 86 57.0
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.3e-15 86.3 85 62.4
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 1.3e-15 86.3 86 58.1
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 1.7e-15 85.9 86 59.3
TPR.G1293 Trifolium pratense HOM05D003633 ORTHO05D004245 1.7e-15 85.9 86 58.1
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 2.2e-15 85.5 85 60.0
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 2.9e-15 85.1 86 59.3
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 2.9e-15 85.1 86 55.8
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 59.3
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 59.3
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 59.3
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 59.3
HanXRQChr06g0181531 Helianthus annuus HOM05D003633 ORTHO05D004245 3.8e-15 84.7 85 58.8
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 57.0
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 3.8e-15 84.7 86 57.0
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 6.4e-15 84.0 86 60.5
Ca_06129_v3 Cicer arietinum L. HOM05D003633 ORTHO05D004245 8.4e-15 83.6 86 58.1
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 1.1e-14 83.2 86 58.1
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 1.1e-14 83.2 86 58.1
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 1.1e-14 83.2 86 55.8
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 1.1e-14 83.2 85 60.0
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.4e-14 82.8 80 58.8
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 1.4e-14 82.8 86 55.8
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 2.4e-14 82.0 86 57.0
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 2.4e-14 82.0 86 57.0
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 2.4e-14 82.0 86 57.0
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 3.2e-14 81.6 86 57.0
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 3.2e-14 81.6 86 55.8
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 3.2e-14 81.6 85 54.1
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 5.4e-14 80.9 86 58.1
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 7.1e-14 80.5 86 54.7
Lj2C854G2 Lonicera japonica HOM05D003633 ORTHO05D004245 1.2e-13 79.7 85 57.6
Lj2C874G5 Lonicera japonica HOM05D003633 ORTHO05D004245 1.2e-13 79.7 85 57.6
Nitab4.5_0000271g0010 Nicotiana tabacum HOM05D003633 ORTHO05D004245 1.2e-13 79.7 85 56.5
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 1.2e-13 79.7 85 56.5
ATR0618G336 Amborella trichopoda HOM05D003633 ORTHO05D004245 1.6e-13 79.3 85 51.8
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 2.1e-13 79.0 85 54.1
FvH4_5g11061 Fragaria vesca HOM05D003633 ORTHO05D004245 2.7e-13 78.6 78 57.7
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 2.7e-13 78.6 78 57.7
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 2.7e-13 78.6 78 57.7
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.7e-13 78.6 85 56.5
Cc01_g08350 Coffea canephora HOM05D003633 ORTHO05D004245 4.6e-13 77.8 85 56.5
Psat2g023680 Pisum sativum HOM05D003633 ORTHO05D004245 4.6e-13 77.8 85 56.5
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 4.6e-13 77.8 85 55.3
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 6.0e-13 77.4 78 57.7
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 1.0e-12 76.6 84 57.1
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 1.3e-12 76.3 86 52.3
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 1.7e-12 75.9 86 51.2
Medtr3g110055 Medicago truncatula HOM05D003633 ORTHO05D004245 6.6e-12 73.9 86 52.3
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 1.5e-11 72.8 78 52.6
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 1.9e-11 72.4 85 54.1
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 2.5e-11 72.0 78 53.8
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 2.5e-11 72.0 85 54.1
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 5.6e-11 70.9 80 53.8
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 5.6e-11 70.9 80 53.8
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 5.6e-11 70.9 80 53.8
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 5.6e-11 70.9 80 53.8
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 5.6e-11 70.9 80 53.8
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 9.6e-11 70.1 68 63.2
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 8.1e-10 67.0 85 51.8
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 1.1e-09 66.6 86 47.7
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 2.0e-08 62.4 85 50.6
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 2.0e-08 62.4 77 49.4
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 3.4e-08 61.6 86 45.3
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 5.8e-08 60.8 86 44.2
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 1.7e-07 59.3 30 96.7
Lsat_1_v5_gn_2_27661 Lactuca sativa HOM05D003633 ORTHO05D004245 1.7e-07 59.3 85 44.7
Nitab4.5_0007575g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.2e-07 58.9 84 42.9
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 2.9e-07 58.5 65 55.4
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 4.9e-07 57.8 44 70.5
TPR.G1272 Trifolium pratense HOM05D003633 ORTHO05D043858 6.4e-07 57.4 40 67.5
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 8.4e-07 57.0 44 68.2
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 5.4e-06 54.3 84 42.9


User provided reference genes

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