Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 0.0e+00 1660.2 803 100.0
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 0.0e+00 1299.3 803 80.6
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1149.0 808 67.3
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1147.1 807 68.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 806 64.5
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1088.9 777 67.4
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1080.1 804 63.1
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1076.2 811 62.9
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1075.1 811 63.0
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 3.0e-308 1061.6 804 62.4
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 5.1e-308 1060.8 808 63.2
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 3.3e-307 1058.1 808 62.6
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.1e-305 1053.1 821 60.4
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 4.0e-305 1051.2 804 62.1
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 1.2e-304 1049.7 809 60.8
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 5.8e-304 1047.3 805 61.7
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 809 61.6
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 3.2e-302 1041.6 808 61.5
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 4.2e-302 1041.2 807 61.5
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 2.1e-301 1038.9 802 61.0
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 2.7e-301 1038.5 805 61.2
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 4.6e-301 1037.7 805 61.4
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 6.0e-301 1037.3 807 60.7
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 1.7e-300 1035.8 805 61.0
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 8.7e-300 1033.5 805 61.1
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 4.3e-299 1031.2 848 58.0
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 7.4e-299 1030.4 806 59.9
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 3.6e-298 1028.1 809 60.7
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 3.6e-298 1028.1 804 60.2
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 3.1e-297 1025.0 805 59.9
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 2.0e-296 1022.3 806 59.6
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 7.6e-296 1020.4 805 60.9
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 9.9e-296 1020.0 842 59.3
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 2.9e-295 1018.5 805 59.6
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 1.1e-294 1016.5 804 59.3
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 1.1e-294 1016.5 806 59.3
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 5.5e-294 1014.2 804 59.2
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 1.2e-293 1013.1 804 60.7
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 2.1e-293 1012.3 820 59.1
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 4.6e-293 1011.1 809 60.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.0e-292 1010.0 806 59.9
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 1.8e-292 1009.2 817 60.0
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 2.3e-292 1008.8 806 59.7
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 7.4e-291 1003.8 806 58.3
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 2.8e-290 1001.9 806 58.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 3.7e-290 1001.5 817 58.8
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 4.8e-290 1001.1 806 59.3
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 7.6e-288 993.8 855 55.8
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 1.0e-287 993.4 761 62.0
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 4.9e-287 991.1 848 55.8
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 4.9e-287 991.1 805 60.0
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.6e-285 986.1 804 59.3
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 1.3e-284 983.0 804 58.2
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 3.0e-284 981.9 837 57.8
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 6.7e-284 980.7 811 58.0
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 5.7e-283 977.6 886 55.1
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 9.6e-283 976.9 805 57.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 3.7e-282 974.9 809 56.7
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 2.4e-281 972.2 809 58.1
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 6.9e-281 970.7 840 55.7
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 2.6e-280 968.8 805 57.4
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 4.5e-280 968.0 808 57.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 5.0e-279 964.5 803 58.0
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 2.5e-278 962.2 808 56.6
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 5.5e-278 961.1 809 57.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.8e-276 956.1 811 56.1
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 1.9e-275 952.6 802 57.5
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.3e-275 951.8 805 56.3
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 5.7e-275 951.0 803 57.2
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 1.3e-274 949.9 811 55.5
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 1.6e-274 949.5 800 56.0
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 3.7e-274 948.3 811 55.7
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 5.3e-273 944.5 812 54.9
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 5.3e-273 944.5 803 56.8
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 2.0e-272 942.6 809 57.2
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 2.0e-272 942.6 809 57.2
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 4.5e-272 941.4 851 53.7
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.7e-271 939.5 808 56.1
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 2.5e-270 935.6 790 56.5
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 1.8e-268 929.5 808 55.9
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 4.3e-267 924.9 801 55.7
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 1.3e-266 923.3 805 56.6
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.4e-265 919.8 804 56.5
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.6e-264 915.6 859 52.7
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 6.7e-260 901.0 803 54.4
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 7.5e-243 844.3 718 57.0
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 5.9e-240 834.7 731 55.1
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.2e-232 810.4 709 55.9
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.0e-215 754.2 598 59.4
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 5.8e-211 738.4 829 47.9
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 6.0e-208 728.4 603 58.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.6e-203 713.0 600 58.0
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 9.2e-201 704.5 830 46.6
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 3.4e-195 686.0 819 44.1
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 3.4e-195 686.0 611 54.2
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.1e-182 644.4 611 52.7
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 2.0e-150 537.3 453 56.5
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.6e-150 537.0 454 56.8
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.2e-147 528.1 533 49.2
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 3.2e-145 520.0 591 46.9
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 5.3e-132 476.1 460 51.5
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.6e-128 464.5 440 53.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.5e-126 458.0 464 50.2
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 4.1e-116 423.3 401 54.4
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.5e-115 419.9 315 63.5
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 4.7e-112 409.8 359 56.8
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 6.0e-91 339.7 340 52.1
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 2.7e-83 314.3 191 70.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.5e-78 298.5 261 56.7
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.4e-76 291.2 306 50.0
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.3e-73 280.8 491 36.9
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.1e-68 265.8 225 58.7
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 9.0e-63 246.1 146 72.6
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.9e-60 238.4 149 71.1
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 3.0e-50 204.5 182 50.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 9.7e-49 199.5 841 24.7
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 3.4e-46 191.0 122 64.8
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 5.9e-46 190.3 147 55.8
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.8e-45 187.6 189 50.8
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.9e-37 161.4 93 71.0
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 5.7e-25 120.6 90 55.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.6e-22 112.5 196 36.7
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.4e-18 99.4 54 75.9
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 4.2e-12 77.8 64 51.6
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.7e-08 65.9 52 50.0
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 3.7e-08 64.7 125 34.4
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 4.8e-08 64.3 193 29.0
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 6.3e-08 63.9 173 30.6
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 6.3e-08 63.9 135 30.4
Prupe.2G260000 Prunus persica HOM05D002006 ORTHO05D002128 1.1e-07 63.2 179 25.7
CsaV3_1G041850 Cucumis sativus L. HOM05D000563 ORTHO05D000536 1.8e-07 62.4 172 27.9
MELO3C015600.2 Cucumis melo HOM05D000563 ORTHO05D000536 2.4e-07 62.0 172 26.7
Nitab4.5_0006999g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.4e-07 62.0 154 29.2
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 2.4e-07 62.0 148 31.8
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 3.1e-07 61.6 172 26.2
DCAR_024880 Daucus carota HOM05D000563 ORTHO05D000536 3.1e-07 61.6 130 30.8
Nitab4.5_0004074g0030 Nicotiana tabacum HOM05D000563 ORTHO05D000536 3.1e-07 61.6 154 29.2
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 3.1e-07 61.6 142 31.0
Nitab4.5_0000647g0180 Nicotiana tabacum HOM05D000563 ORTHO05D000536 4.1e-07 61.2 154 30.5
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 4.1e-07 61.2 148 31.8
SGA_v2.0_scaffold2G01048 Striga asiatica HOM05D000563 ORTHO05D000536 4.1e-07 61.2 124 33.9
CAN.G1184.7 Capsicum annuum HOM05D000563 ORTHO05D000536 5.4e-07 60.8 188 27.7
Solyc05g052960.4 Solanum lycopersicum HOM05D000563 ORTHO05D000536 5.4e-07 60.8 154 29.2
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 5.4e-07 60.8 166 27.1
Nitab4.5_0005829g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 7.0e-07 60.5 154 28.6
PSO170G4851 Papaver somniferum HOM05D000563 ORTHO05D000536 7.0e-07 60.5 128 29.7
Sopen05g031480 Solanum pennellii HOM05D000563 ORTHO05D000536 7.0e-07 60.5 154 29.2
Atru.chr13.1489 Acer truncatum HOM05D002322 ORTHO05D002536 9.1e-07 60.1 121 29.8
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 9.1e-07 60.1 153 28.1
Os08g0516550 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 130 30.0
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 125 29.6
SGA_v2.0_scaffold221G42703 Striga asiatica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 151 29.8
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 1.2e-06 59.7 172 29.1
PGSC0003DMG400027195 Solanum tuberosum HOM05D000563 ORTHO05D000536 1.2e-06 59.7 154 27.9
TPR.G11682 Trifolium pratense HOM05D000563 ORTHO05D000536 1.2e-06 59.7 129 31.0
HanXRQChr12g0369531 Helianthus annuus HOM05D000563 ORTHO05D000536 1.6e-06 59.3 125 32.0
Sed0006586 Sechium edule HOM05D000563 ORTHO05D000536 1.6e-06 59.3 163 29.4
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 1.6e-06 59.3 169 29.6
Lsat_1_v5_gn_8_14841 Lactuca sativa HOM05D000563 ORTHO05D000536 2.0e-06 58.9 129 30.2
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 2.0e-06 58.9 147 30.6
SEGI_14738 Sequoiadendron giganteum HOM05D000563 ORTHO05D000536 2.0e-06 58.9 134 29.9
SEGI_22399 Sequoiadendron giganteum HOM05D000563 ORTHO05D000536 2.0e-06 58.9 134 29.9
AUR62020180 Chenopodium quinoa HOM05D000563 ORTHO05D000536 2.7e-06 58.5 137 32.8
Oeu017564.1 Olea europaea HOM05D000563 ORTHO05D000536 2.7e-06 58.5 154 27.3
HPP92_020334 Vanilla planifolia HOM05D000563 ORTHO05D000536 2.7e-06 58.5 128 32.0
COL.COLO4_38202 Corchorus olitorius HOM05D002006 ORTHO05D002128 4.5e-06 57.8 313 22.4
PSO729G0037 Papaver somniferum HOM05D000563 ORTHO05D000536 4.5e-06 57.8 143 37.1
PSO782G4446 Papaver somniferum HOM05D000563 ORTHO05D000536 4.5e-06 57.8 123 30.9
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 4.5e-06 57.8 140 28.6
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 4.5e-06 57.8 140 28.6
HPP92_007974 Vanilla planifolia HOM05D000563 ORTHO05D000536 4.5e-06 57.8 128 32.0
AUR62001599 Chenopodium quinoa HOM05D000563 ORTHO05D000536 5.9e-06 57.4 137 32.1
Os08g0516200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D002647 5.9e-06 57.4 138 29.7
TAR623G1349 Trochodendron aralioides HOM05D000563 ORTHO05D000536 5.9e-06 57.4 151 30.5
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 7.7e-06 57.0 115 30.4
Cc02_g07400 Coffea canephora HOM05D000563 ORTHO05D000536 7.7e-06 57.0 195 28.2
Cc10_g12000 Coffea canephora HOM05D002322 ORTHO05D002536 7.7e-06 57.0 114 31.6
Lj8A79G93 Lonicera japonica HOM05D000563 ORTHO05D000536 7.7e-06 57.0 147 29.9
Nn2g11235 Nelumbo nucifera HOM05D000563 ORTHO05D000536 7.7e-06 57.0 138 31.2
Os08g0198300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 7.7e-06 57.0 150 25.3
SGA_v2.0_scaffold90G27764 Striga asiatica HOM05D000563 ORTHO05D000536 7.7e-06 57.0 125 29.6
TAR369G0361 Trochodendron aralioides HOM05D000563 ORTHO05D000536 7.7e-06 57.0 149 29.5


User provided reference genes

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