Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 5.2e-187 657.5 325 100.0
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 4.3e-104 382.1 289 63.7
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 5.6e-104 381.7 292 64.7
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.6e-103 380.2 287 63.8
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 5.2e-102 375.2 286 62.2
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.5e-101 373.6 287 62.4
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 2.2e-100 369.8 287 62.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 4.1e-99 365.5 283 62.2
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 1.2e-98 364.0 295 61.7
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.2e-98 364.0 287 61.0
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 5.9e-98 361.7 284 59.2
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 5.9e-98 361.7 302 59.6
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 7.8e-98 361.3 287 61.3
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 1.0e-97 360.9 284 61.3
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.0e-97 360.9 283 60.4
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 1.0e-97 360.9 287 60.6
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.7e-97 360.1 286 59.8
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 1.7e-97 360.1 285 58.9
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 2.3e-97 359.8 283 62.5
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 2.3e-97 359.8 284 59.5
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 5.0e-97 358.6 317 57.4
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 6.6e-97 358.2 287 60.3
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 8.6e-97 357.8 284 58.8
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 1.1e-96 357.5 289 60.6
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.5e-96 356.3 289 60.2
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 4.3e-96 355.5 285 60.7
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 4.3e-96 355.5 286 60.5
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 7.3e-96 354.8 291 61.2
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.2e-95 354.0 284 58.8
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.2e-95 354.0 316 56.3
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 2.1e-95 353.2 287 59.9
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 2.1e-95 353.2 286 62.2
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.8e-95 352.8 311 57.6
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 4.7e-95 352.1 282 62.4
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 4.7e-95 352.1 320 57.5
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 8.0e-95 351.3 287 58.9
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 8.0e-95 351.3 287 58.9
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 8.0e-95 351.3 292 59.2
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 8.0e-95 351.3 286 61.2
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.4e-94 350.5 286 60.5
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 1.8e-94 350.1 304 58.9
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.8e-94 350.1 286 60.8
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.8e-94 350.1 294 59.2
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 2.3e-94 349.7 286 60.5
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 2.3e-94 349.7 287 57.8
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 3.1e-94 349.4 290 57.6
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 3.1e-94 349.4 281 60.1
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 5.2e-94 348.6 290 60.0
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 5.2e-94 348.6 287 57.8
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 5.2e-94 348.6 291 58.8
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 6.8e-94 348.2 287 59.2
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 8.9e-94 347.8 293 58.4
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 8.9e-94 347.8 284 59.5
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 2.6e-93 346.3 289 58.5
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 3.4e-93 345.9 289 58.1
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 3.4e-93 345.9 326 52.8
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 4.4e-93 345.5 291 59.1
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 4.4e-93 345.5 304 57.2
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 9.8e-93 344.4 289 58.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 9.8e-93 344.4 284 58.5
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.3e-92 344.0 285 58.6
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.3e-92 344.0 290 59.3
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 2.2e-92 343.2 322 54.0
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.7e-92 342.4 285 58.2
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 6.4e-92 341.7 305 55.7
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.1e-91 340.9 287 59.6
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.9e-91 340.1 284 59.9
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 4.1e-91 339.0 291 59.1
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 1.2e-90 337.4 283 59.7
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 6.0e-90 335.1 284 59.2
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 7.8e-90 334.7 371 49.9
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.8e-90 334.7 282 59.2
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 1.3e-89 334.0 293 58.7
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 3.0e-89 332.8 282 59.2
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 4.3e-88 328.9 282 57.8
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 1.4e-86 323.9 295 56.9
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.4e-86 323.9 297 55.6
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.8e-86 323.6 352 51.1
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.0e-85 320.1 281 55.9
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.6e-85 319.7 268 58.2
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 3.4e-85 319.3 285 56.8
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.7e-84 315.8 283 55.8
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 2.4e-83 313.2 284 55.6
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 1.5e-80 303.9 278 55.8
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.5e-80 303.1 271 57.2
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.2e-79 300.8 285 54.4
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 4.7e-79 298.9 250 57.6
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 1.5e-77 293.9 247 59.1
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 4.3e-72 275.8 283 50.9
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 3.6e-71 272.7 285 51.6
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 4.0e-70 269.2 264 52.7
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 5.2e-70 268.9 202 63.4
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.6e-66 255.8 210 57.1
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 6.6e-65 251.9 301 45.5
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 4.8e-63 245.7 289 42.9
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 1.6e-58 230.7 323 39.6
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 3.0e-57 226.5 290 42.4
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.0e-53 213.8 146 68.5
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 9.6e-48 194.9 136 66.9
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.6e-47 194.1 220 45.0
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 3.2e-43 179.9 277 37.9
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 5.1e-41 172.6 159 51.6
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 2.1e-39 167.2 154 50.6
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 9.0e-38 161.8 360 31.1
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 2.5e-32 143.7 294 35.0
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.3e-31 141.4 163 46.0
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 4.1e-22 109.8 138 39.1
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.5e-21 107.8 67 70.1
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.7e-15 86.7 147 36.1
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 9.1e-14 82.0 69 55.1
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 2.5e-11 73.9 171 33.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.8e-09 67.8 165 33.3
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 5.2e-09 66.2 149 31.5
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 5.2e-09 66.2 335 24.5
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.5e-08 64.7 183 32.2
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.6e-08 63.9 176 31.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.6e-08 63.9 183 31.1
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 3.3e-08 63.5 177 31.1
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 3.3e-08 63.5 99 35.4
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 4.4e-08 63.2 184 29.9
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 7.5e-08 62.4 157 26.8
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.3e-07 61.6 184 29.9
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 1.3e-07 61.6 177 31.6
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.7e-07 61.2 148 27.7
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.7e-07 61.2 174 31.6
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.2e-07 60.8 173 34.1
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.2e-07 60.8 171 32.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.2e-07 60.8 171 32.2
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.8e-07 60.5 61 52.5
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.8e-07 60.5 61 52.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.8e-07 60.5 145 28.3
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 2.8e-07 60.5 148 28.4
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 3.7e-07 60.1 176 31.8
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 4.8e-07 59.7 175 30.9
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.8e-07 59.7 188 29.8
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 6.3e-07 59.3 169 32.0
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 6.3e-07 59.3 148 27.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 8.2e-07 58.9 148 27.0
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 8.2e-07 58.9 185 29.2
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 8.2e-07 58.9 185 29.2
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 8.2e-07 58.9 185 29.2
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.1e-06 58.5 187 29.9
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.1e-06 58.5 184 29.3
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 1.4e-06 58.2 184 29.9
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.4e-06 58.2 188 27.1
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.8e-06 57.8 186 29.6
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 1.8e-06 57.8 179 29.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 2.4e-06 57.4 148 27.0
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 4.1e-06 56.6 192 27.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.1e-06 56.6 178 29.2
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 5.3e-06 56.2 175 30.3
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 7.0e-06 55.8 151 30.5
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 7.0e-06 55.8 180 30.6
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 7.0e-06 55.8 148 28.4


User provided reference genes

Program Settings