Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.5e-180 634.4 378 100.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.5e-142 508.8 343 92.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.6e-94 349.4 335 58.2
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.9e-92 343.6 326 58.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.7e-92 341.3 334 66.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.1e-90 337.8 334 65.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.0e-88 331.3 334 56.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 4.2e-87 325.9 334 53.9
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 7.2e-87 325.1 335 55.5
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.6e-86 322.8 334 54.5
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 7.9e-86 321.6 334 53.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-85 320.1 334 53.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.0e-85 319.7 334 64.4
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.1e-85 318.9 334 60.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.1e-85 318.9 334 60.8
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 5.1e-85 318.9 340 55.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-84 317.8 334 51.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.5e-84 317.4 334 52.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 4.4e-84 315.8 344 53.5
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 7.4e-84 315.1 334 52.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.7e-83 313.9 334 56.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.7e-83 313.9 334 50.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.2e-83 313.5 329 52.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-83 313.5 334 51.5
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 8.2e-83 311.6 334 52.4
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 8.2e-83 311.6 340 50.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 8.2e-83 311.6 334 50.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-82 311.2 334 51.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.4e-82 310.1 334 51.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.4e-82 310.1 328 52.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.4e-82 310.1 336 52.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.4e-82 310.1 343 51.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 4.1e-82 309.3 348 49.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.1e-82 309.3 315 52.1
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 5.3e-82 308.9 315 57.8
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 5.3e-82 308.9 329 63.2
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 6.9e-82 308.5 328 53.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-81 307.8 329 54.1
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.2e-81 307.8 329 52.6
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-81 307.8 344 52.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.5e-81 307.4 334 52.7
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.4e-81 306.2 334 49.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 4.5e-81 305.8 334 50.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 5.9e-81 305.4 345 51.3
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.9e-81 305.4 342 54.4
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.3e-80 304.3 334 50.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.3e-80 304.3 334 62.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.2e-80 303.5 332 52.1
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.9e-80 303.1 334 54.2
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.9e-80 303.1 330 52.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.0e-80 302.4 340 52.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.5e-80 302.0 350 51.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.5e-80 301.6 333 59.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.1e-79 301.2 334 48.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.4e-79 300.8 334 62.0
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.9e-79 300.4 334 49.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 4.2e-79 299.3 318 51.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.5e-79 298.9 334 49.7
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.2e-79 298.5 311 54.0
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.4e-79 298.1 334 50.6
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.2e-78 297.7 318 53.1
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.6e-78 297.4 340 49.1
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.7e-78 296.6 334 50.3
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.6e-78 296.2 334 64.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.7e-78 295.8 340 54.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.1e-78 295.4 329 49.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.9e-78 295.0 340 48.8
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.0e-77 294.7 334 50.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-77 294.3 334 50.0
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.3e-77 293.5 318 50.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.0e-77 293.1 334 49.7
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.3e-76 289.7 328 55.5
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.3e-76 289.7 347 49.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.7e-76 288.9 340 47.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.7e-75 287.3 334 60.2
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 6.3e-75 285.4 318 50.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.1e-74 282.7 389 49.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 5.3e-74 282.3 340 49.1
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 5.3e-74 282.3 334 52.7
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.9e-73 278.9 334 49.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.0e-72 278.1 334 55.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.7e-72 277.3 334 54.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.9e-72 276.6 334 58.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 8.5e-72 275.0 318 59.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.2e-71 273.1 334 54.8
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.2e-71 273.1 334 54.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.2e-71 273.1 331 54.4
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.2e-70 271.2 348 56.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.1e-70 270.4 334 47.0
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.1e-70 268.9 340 53.5
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.8e-69 267.3 314 57.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.8e-69 267.3 334 53.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.0e-69 266.5 318 48.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.2e-69 265.8 334 55.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 9.1e-66 255.0 322 51.6
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 9.1e-66 255.0 329 52.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-65 254.2 335 46.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-65 253.4 334 46.7
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.0e-64 251.5 319 48.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.7e-64 250.8 243 55.1
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.2e-64 250.4 319 49.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 6.5e-64 248.8 317 46.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-63 247.3 320 44.7
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.7e-62 243.4 318 43.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.6e-62 243.0 342 48.0
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 3.0e-61 240.0 327 45.0
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.7e-59 233.0 316 46.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-58 231.5 243 50.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 3.1e-58 229.9 224 51.3
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.1e-58 228.4 243 49.4
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.9e-56 223.4 334 51.5
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.1e-55 221.5 290 45.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.5e-55 219.2 321 43.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 6.8e-53 212.2 317 42.3
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.9e-51 206.1 331 39.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.3e-51 205.3 319 43.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.8e-50 204.1 319 47.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.4e-50 203.8 325 42.2
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.2e-50 201.8 322 42.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.0e-49 200.7 314 42.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-48 198.0 305 43.9
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.1e-47 194.9 305 44.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.1e-47 194.9 321 40.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.6e-46 191.0 307 52.1
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.1e-46 190.7 328 48.8
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-45 188.3 319 41.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.0e-45 188.3 319 41.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.8e-45 187.6 318 47.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.3e-45 187.2 227 45.4
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.0e-45 186.8 319 40.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.0e-45 186.4 321 39.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.2e-44 184.9 339 44.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-44 184.5 319 40.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.4e-44 183.3 319 40.1
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 7.5e-44 182.2 286 42.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.8e-44 181.8 228 44.7
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.6e-41 174.5 316 36.7
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.6e-41 174.5 324 38.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-41 174.1 301 40.9
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.0e-40 171.8 326 36.5
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.7e-40 171.0 320 37.2
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 6.6e-40 169.1 318 37.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.6e-39 166.0 319 37.9
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 9.5e-39 165.2 301 39.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 9.5e-39 165.2 319 38.2
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 9.5e-39 165.2 313 39.3
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.1e-38 164.1 241 42.7
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.7e-38 162.9 338 35.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-38 162.5 223 46.2
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-37 161.8 320 36.9
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.0e-37 159.8 290 37.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.9e-35 153.7 308 34.4
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 7.0e-34 149.1 322 36.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 3.5e-33 146.7 181 43.1
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.3e-32 144.1 316 32.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.9e-27 127.1 228 39.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.1e-26 125.2 220 40.5
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.4e-26 122.9 154 63.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.1e-26 122.5 201 41.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.7e-24 117.9 134 53.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-23 115.2 194 40.2
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.6e-23 112.8 142 47.2
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.3e-23 112.5 301 32.2
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-15 87.8 313 27.8
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 9.0e-13 79.0 55 74.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.4e-12 76.6 66 65.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.3e-10 68.9 279 26.9
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.3e-06 58.5 139 36.0


User provided reference genes

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